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Items: 1 to 20 of 233

1.

Peak detection in mass spectrometry by Gabor filters and envelope analysis.

Nguyen N, Huang H, Oraintara S, Vo A.

J Bioinform Comput Biol. 2009 Jun;7(3):547-69.

PMID:
19507289
2.

GaborLocal: peak detection in mass spectrum by Gabor filters and Gaussian local maxima.

Nguyen N, Huang H, Oraintara S, Vo A.

Comput Syst Bioinformatics Conf. 2008;7:85-96.

3.

Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet.

Nguyen N, Huang H, Oraintara S, Vo A.

Bioinformatics. 2010 Sep 15;26(18):i659-65. doi: 10.1093/bioinformatics/btq397.

4.

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.

Du P, Kibbe WA, Lin SM.

Bioinformatics. 2006 Sep 1;22(17):2059-65. Epub 2006 Jul 4.

5.

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis.

Yang C, He Z, Yu W.

BMC Bioinformatics. 2009 Jan 6;10:4. doi: 10.1186/1471-2105-10-4.

6.

Proteomic data analysis workflow for discovery of candidate biomarker peaks predictive of clinical outcome for patients with acute myeloid leukemia.

Forshed J, Pernemalm M, Tan CS, Lindberg M, Kanter L, Pawitan Y, Lewensohn R, Stenke L, Lehtiö J.

J Proteome Res. 2008 Jun;7(6):2332-41. doi: 10.1021/pr070482e. Epub 2008 May 2.

PMID:
18452325
7.

High-accuracy peak picking of proteomics data using wavelet techniques.

Lange E, Gröpl C, Reinert K, Kohlbacher O, Hildebrandt A.

Pac Symp Biocomput. 2006:243-54.

8.

LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise.

Mantini D, Petrucci F, Pieragostino D, Del Boccio P, Di Nicola M, Di Ilio C, Federici G, Sacchetta P, Comani S, Urbani A.

BMC Bioinformatics. 2007 Mar 26;8:101.

9.

Application of the random forest classification method to peaks detected from mass spectrometric proteomic profiles of cancer patients and controls.

Barrett JH, Cairns DA.

Stat Appl Genet Mol Biol. 2008;7(2):Article4. doi: 10.2202/1544-6115.1349. Epub 2008 Feb 8.

PMID:
18312218
10.

Peak selection from MALDI-TOF mass spectra using ant colony optimization.

Ressom HW, Varghese RS, Drake SK, Hortin GL, Abdel-Hamid M, Loffredo CA, Goldman R.

Bioinformatics. 2007 Mar 1;23(5):619-26. Epub 2007 Jan 19.

11.

A universal denoising and peak picking algorithm for LC-MS based on matched filtration in the chromatographic time domain.

Andreev VP, Rejtar T, Chen HS, Moskovets EV, Ivanov AR, Karger BL.

Anal Chem. 2003 Nov 15;75(22):6314-26.

PMID:
14616016
12.

A wavelet-based data pre-processing analysis approach in mass spectrometry.

Li X, Li J, Yao X.

Comput Biol Med. 2007 Apr;37(4):509-16. Epub 2006 Sep 18.

PMID:
16982045
13.

Application of multiple statistical tests to enhance mass spectrometry-based biomarker discovery.

Tan NC, Fisher WG, Rosenblatt KP, Garner HR.

BMC Bioinformatics. 2009 May 14;10:144. doi: 10.1186/1471-2105-10-144.

14.

BioSunMS: a plug-in-based software for the management of patients information and the analysis of peptide profiles from mass spectrometry.

Cao Y, Wang N, Ying X, Li A, Wang H, Zhang X, Li W.

BMC Med Inform Decis Mak. 2009 Feb 17;9:13. doi: 10.1186/1472-6947-9-13.

15.

Feature extraction and dimensionality reduction for mass spectrometry data.

Liu Y.

Comput Biol Med. 2009 Sep;39(9):818-23. doi: 10.1016/j.compbiomed.2009.06.012. Epub 2009 Jul 30.

PMID:
19646687
16.

Finding regions of significance in SELDI measurements for identifying protein biomarkers.

Tan CS, Ploner A, Quandt A, Lehtiö J, Pawitan Y.

Bioinformatics. 2006 Jun 15;22(12):1515-23. Epub 2006 Mar 27.

17.

Peak tree: a new tool for multiscale hierarchical representation and peak detection of mass spectrometry data.

Zhang P, Li H, Wang H, Wong ST, Zhou X.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):1054-66. doi: 10.1109/TCBB.2009.56.

PMID:
21566254
18.

A strategy for the prior processing of high-resolution mass spectral data obtained from high-dimensional combined fractional diagonal chromatography.

Valkenborg D, Thomas G, Krols L, Kas K, Burzykowski T.

J Mass Spectrom. 2009 Apr;44(4):516-29. doi: 10.1002/jms.1527.

PMID:
19065607
19.

Signal maps for mass spectrometry-based comparative proteomics.

Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B.

Mol Cell Proteomics. 2006 Mar;5(3):423-32. Epub 2005 Nov 3.

20.

Independent component analysis for the extraction of reliable protein signal profiles from MALDI-TOF mass spectra.

Mantini D, Petrucci F, Del Boccio P, Pieragostino D, Di Nicola M, Lugaresi A, Federici G, Sacchetta P, Di Ilio C, Urbani A.

Bioinformatics. 2008 Jan 1;24(1):63-70. Epub 2007 Nov 14.

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