Similar articles for PMID: 19496057

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1

RNA secondary structure analysis using the Vienna RNA package.

Hofacker IL. Hofacker IL. Curr Protoc Bioinformatics. 2009 Jun;Chapter 12:12.2.1-12.2.16. doi: 10.1002/0471250953.bi1202s26. Curr Protoc Bioinformatics. 2009. PMID: 19496057

2

RNA secondary structure analysis using the Vienna RNA package.

Hofacker IL. Hofacker IL. Curr Protoc Bioinformatics. 2004 Feb;Chapter 12:Unit 12.2. doi: 10.1002/0471250953.bi1202s04. Curr Protoc Bioinformatics. 2004. PMID: 18428716

3

Vienna RNA secondary structure server.

Hofacker IL. Hofacker IL. Nucleic Acids Res. 2003 Jul 1;31(13):3429-31. doi: 10.1093/nar/gkg599. Nucleic Acids Res. 2003. PMID: 12824340 Free PMC article.

4

RNA secondary structure analysis using the RNAshapes package.

Reeder J, Giegerich R. Reeder J, et al. Curr Protoc Bioinformatics. 2009 Jun;Chapter 12:12.8.1-12.8.17. doi: 10.1002/0471250953.bi1208s26. Curr Protoc Bioinformatics. 2009. PMID: 19496058

5

Memory efficient folding algorithms for circular RNA secondary structures.

Hofacker IL, Stadler PF. Hofacker IL, et al. Bioinformatics. 2006 May 15;22(10):1172-6. doi: 10.1093/bioinformatics/btl023. Epub 2006 Feb 1. Bioinformatics. 2006. PMID: 16452114

6

RNAstructure: software for RNA secondary structure prediction and analysis.

Reuter JS, Mathews DH. Reuter JS, et al. BMC Bioinformatics. 2010 Mar 15;11:129. doi: 10.1186/1471-2105-11-129. BMC Bioinformatics. 2010. PMID: 20230624 Free PMC article.

7

The Vienna RNA websuite.

Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL. Gruber AR, et al. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4. doi: 10.1093/nar/gkn188. Epub 2008 Apr 19. Nucleic Acids Res. 2008. PMID: 18424795 Free PMC article.

8

Pfold: RNA secondary structure prediction using stochastic context-free grammars.

Knudsen B, Hein J. Knudsen B, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3423-8. doi: 10.1093/nar/gkg614. Nucleic Acids Res. 2003. PMID: 12824339 Free PMC article.

9

RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.

Li Y, Shi X, Liang Y, Xie J, Zhang Y, Ma Q. Li Y, et al. BMC Bioinformatics. 2017 Jan 21;18(1):51. doi: 10.1186/s12859-017-1481-7. BMC Bioinformatics. 2017. PMID: 28109252 Free PMC article.

10

Computational RNA secondary structure design: empirical complexity and improved methods.

Aguirre-Hernández R, Hoos HH, Condon A. Aguirre-Hernández R, et al. BMC Bioinformatics. 2007 Jan 31;8:34. doi: 10.1186/1471-2105-8-34. BMC Bioinformatics. 2007. PMID: 17266771 Free PMC article.

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