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Results: 1 to 20 of 59

1.
2.

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.

Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES.

BMC Genomics. 2007 Feb 20;8:53.

PMID:
17311676
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO.

Nat Genet. 1999 Sep;23(1):41-6.

PMID:
10471496
[PubMed - indexed for MEDLINE]
4.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

PMID:
17062145
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

PMID:
20429936
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Advanced analysis and visualization of gene copy number and expression data.

Autio R, Saarela M, Järvinen AK, Hautaniemi S, Astola J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S70. doi: 10.1186/1471-2105-10-S1-S70.

PMID:
19208175
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
[PubMed - indexed for MEDLINE]
8.

Combined use of expression and CGH arrays pinpoints novel candidate genes in Ewing sarcoma family of tumors.

Savola S, Klami A, Tripathi A, Niini T, Serra M, Picci P, Kaski S, Zambelli D, Scotlandi K, Knuutila S.

BMC Cancer. 2009 Jan 14;9:17. doi: 10.1186/1471-2407-9-17.

PMID:
19144156
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A chain reaction approach to modelling gene pathways.

Cheng GC, Chen DT, Chen JJ, Soong SJ, Lamartiniere C, Barnes S.

Transl Cancer Res. 2012 Aug 1;1(2):61-73. Epub 2012 May 31.

PMID:
22943042
[PubMed]
Free PMC Article
10.

CHESS (CgHExpreSS): a comprehensive analysis tool for the analysis of genomic alterations and their effects on the expression profile of the genome.

Lee M, Kim Y.

BMC Bioinformatics. 2009 Dec 16;10:424. doi: 10.1186/1471-2105-10-424.

PMID:
20003544
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

[CGH (comparative genomic hybridization)].

Sakamoto M, Sakamoto H, Suehiro Y, Akiya T, Iwabuchi H, Sakunaga H, Muroya T, Noda T, Sugishita T, Tenjin Y.

Nihon Rinsho. 1996 Apr;54(4):933-43. Review. Japanese.

PMID:
8920653
[PubMed - indexed for MEDLINE]
12.

Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors.

Kallioniemi OP, Kallioniemi A, Piper J, Isola J, Waldman FM, Gray JW, Pinkel D.

Genes Chromosomes Cancer. 1994 Aug;10(4):231-43. Review.

PMID:
7522536
[PubMed - indexed for MEDLINE]
13.

ACTuDB, a new database for the integrated analysis of array-CGH and clinical data for tumors.

Hupé P, La Rosa P, Liva S, Lair S, Servant N, Barillot E.

Oncogene. 2007 Oct 11;26(46):6641-52. Epub 2007 May 14.

PMID:
17496932
[PubMed - indexed for MEDLINE]
14.

GPAT: retrieval of genomic annotation from large genomic position datasets.

Krebs A, Frontini M, Tora L.

BMC Bioinformatics. 2008 Dec 15;9:533. doi: 10.1186/1471-2105-9-533.

PMID:
19077303
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Whole genome oligonucleotide-based array comparative genomic hybridization analysis identified fibroblast growth factor 1 as a prognostic marker for advanced-stage serous ovarian adenocarcinomas.

Birrer MJ, Johnson ME, Hao K, Wong KK, Park DC, Bell A, Welch WR, Berkowitz RS, Mok SC.

J Clin Oncol. 2007 Jun 1;25(16):2281-7. Erratum in: J Clin Oncol. 2007 Jul 20;25(21):3184.

PMID:
17538174
[PubMed - indexed for MEDLINE]
Free Article
16.

Estimation of tumor heterogeneity using CGH array data.

Wang K, Li J, Li S, Bolund L, Wiuf C.

BMC Bioinformatics. 2009 Jan 9;10:12. doi: 10.1186/1471-2105-10-12.

PMID:
19134174
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gene ontology application to genomic functional annotation, statistical analysis and knowledge mining.

Martucci D, Masseroli M, Pinciroli F.

Stud Health Technol Inform. 2004;102:108-31.

PMID:
15853267
[PubMed - indexed for MEDLINE]
18.

Molecular cytogenetics as a clinical test for prognostic and predictive biomarkers in newly diagnosed ovarian cancer.

Gunn S, Reveles X, Weldon K, Barrera A, Ishaque M, Taylor D, McCaskill C, Kim J, Shah R, Mohammed M, Barry T, Kaiser B, Patnaik A, Tolcher A.

J Ovarian Res. 2013 Jan 4;6(1):2. doi: 10.1186/1757-2215-6-2.

PMID:
23289505
[PubMed]
Free PMC Article
19.

Bladder cancer stage and outcome by array-based comparative genomic hybridization.

Blaveri E, Brewer JL, Roydasgupta R, Fridlyand J, DeVries S, Koppie T, Pejavar S, Mehta K, Carroll P, Simko JP, Waldman FM.

Clin Cancer Res. 2005 Oct 1;11(19 Pt 1):7012-22.

PMID:
16203795
[PubMed - indexed for MEDLINE]
Free Article
20.

High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization.

Nakao K, Mehta KR, Fridlyand J, Moore DH, Jain AN, Lafuente A, Wiencke JW, Terdiman JP, Waldman FM.

Carcinogenesis. 2004 Aug;25(8):1345-57. Epub 2004 Mar 4.

PMID:
15001537
[PubMed - indexed for MEDLINE]
Free Article
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