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Results: 1 to 20 of 360

1.

Application of multiple statistical tests to enhance mass spectrometry-based biomarker discovery.

Tan NC, Fisher WG, Rosenblatt KP, Garner HR.

BMC Bioinformatics. 2009 May 14;10:144. doi: 10.1186/1471-2105-10-144.

PMID:
19442303
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Proteomic data analysis workflow for discovery of candidate biomarker peaks predictive of clinical outcome for patients with acute myeloid leukemia.

Forshed J, Pernemalm M, Tan CS, Lindberg M, Kanter L, Pawitan Y, Lewensohn R, Stenke L, Lehtiƶ J.

J Proteome Res. 2008 Jun;7(6):2332-41. doi: 10.1021/pr070482e. Epub 2008 May 2.

PMID:
18452325
[PubMed - indexed for MEDLINE]
3.

A robust biomarker discovery pipeline for high-performance mass spectrometry data.

Fisher WG, Rosenblatt KP, Fishman DA, Whiteley GR, Mikulskis A, Kuzdzal SA, Lopez MF, Tan NC, German DC, Garner HR.

J Bioinform Comput Biol. 2007 Oct;5(5):1023-45.

PMID:
17933009
[PubMed - indexed for MEDLINE]
4.

A computational platform for MALDI-TOF mass spectrometry data: application to serum and plasma samples.

Mantini D, Petrucci F, Pieragostino D, Del Boccio P, Sacchetta P, Candiano G, Ghiggeri GM, Lugaresi A, Federici G, Di Ilio C, Urbani A.

J Proteomics. 2010 Jan 3;73(3):562-70. doi: 10.1016/j.jprot.2009.11.004. Epub 2009 Nov 13.

PMID:
19914411
[PubMed - indexed for MEDLINE]
5.

Biomarker discovery for kidney diseases by mass spectrometry.

Niwa T.

J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Jul 15;870(2):148-53. Epub 2007 Nov 1. Review.

PMID:
18024247
[PubMed - indexed for MEDLINE]
6.

Simultaneous and exact interval estimates for the contrast of two groups based on an extremely high dimensional variable: application to mass spec data.

Park Y, Downing SR, Kim D, Hahn WC, Li C, Kantoff PW, Wei LJ.

Bioinformatics. 2007 Jun 15;23(12):1451-8. Epub 2007 Apr 25.

PMID:
17459967
[PubMed - indexed for MEDLINE]
Free Article
7.

Protocols for disease classification from mass spectrometry data.

Wagner M, Naik D, Pothen A.

Proteomics. 2003 Sep;3(9):1692-8.

PMID:
12973727
[PubMed - indexed for MEDLINE]
8.

A strategy for the prior processing of high-resolution mass spectral data obtained from high-dimensional combined fractional diagonal chromatography.

Valkenborg D, Thomas G, Krols L, Kas K, Burzykowski T.

J Mass Spectrom. 2009 Apr;44(4):516-29. doi: 10.1002/jms.1527.

PMID:
19065607
[PubMed - indexed for MEDLINE]
9.

Microorganism identification by matrix-assisted laser/desorption ionization mass spectrometry and model-derived ribosomal protein biomarkers.

Pineda FJ, Antoine MD, Demirev PA, Feldman AB, Jackman J, Longenecker M, Lin JS.

Anal Chem. 2003 Aug 1;75(15):3817-22.

PMID:
14572048
[PubMed - indexed for MEDLINE]
10.

Identification of biomarkers for risk stratification of cardiovascular events using genetic algorithm with recursive local floating search.

Zhou X, Wang H, Wang J, Wang Y, Hoehn G, Azok J, Brennan ML, Hazen SL, Li K, Chang SF, Wong ST.

Proteomics. 2009 Apr;9(8):2286-94. doi: 10.1002/pmic.200700867.

PMID:
19337989
[PubMed - indexed for MEDLINE]
11.

Peak selection from MALDI-TOF mass spectra using ant colony optimization.

Ressom HW, Varghese RS, Drake SK, Hortin GL, Abdel-Hamid M, Loffredo CA, Goldman R.

Bioinformatics. 2007 Mar 1;23(5):619-26. Epub 2007 Jan 19.

PMID:
17237065
[PubMed - indexed for MEDLINE]
Free Article
12.

Comparison of normalization methods for the identification of biomarkers using MALDI-TOF and SELDI-TOF mass spectra.

Borgaonkar SP, Hocker H, Shin H, Markey MK.

OMICS. 2010 Feb;14(1):115-26. doi: 10.1089/omi.2009.0082.

PMID:
20141334
[PubMed - indexed for MEDLINE]
13.

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis.

Yang C, He Z, Yu W.

BMC Bioinformatics. 2009 Jan 6;10:4. doi: 10.1186/1471-2105-10-4.

PMID:
19126200
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

An extended Markov blanket approach to proteomic biomarker detection from high-resolution mass spectrometry data.

Oh JH, Gurnani P, Schorge J, Rosenblatt KP, Gao JX.

IEEE Trans Inf Technol Biomed. 2009 Mar;13(2):195-206. doi: 10.1109/TITB.2008.2007909. Epub 2008 Dec 31.

PMID:
19126475
[PubMed - indexed for MEDLINE]
15.

Logical Analysis of Data (LAD) model for the early diagnosis of acute ischemic stroke.

Reddy A, Wang H, Yu H, Bonates TO, Gulabani V, Azok J, Hoehn G, Hammer PL, Baird AE, Li KC.

BMC Med Inform Decis Mak. 2008 Jul 10;8:30. doi: 10.1186/1472-6947-8-30.

PMID:
18616825
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Biomarker discovery from body fluids using mass spectrometry.

Villar-Garea A, Griese M, Imhof A.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Apr 15;849(1-2):105-14. Epub 2006 Nov 9. Review.

PMID:
17097359
[PubMed - indexed for MEDLINE]
17.

High-throughput biomarker discovery and identification by mass spectrometry.

Menzel C, Guillou V, Kellmann M, Khamenya V, Juergens M, Schulz-Knappe P.

Comb Chem High Throughput Screen. 2005 Dec;8(8):743-55.

PMID:
16464161
[PubMed - indexed for MEDLINE]
18.

Peak detection in mass spectrometry by Gabor filters and envelope analysis.

Nguyen N, Huang H, Oraintara S, Vo A.

J Bioinform Comput Biol. 2009 Jun;7(3):547-69.

PMID:
19507289
[PubMed - indexed for MEDLINE]
19.

Prostate cancer biomarker discovery using high performance mass spectral serum profiling.

Oh JH, Lotan Y, Gurnani P, Rosenblatt KP, Gao J.

Comput Methods Programs Biomed. 2009 Oct;96(1):33-41. doi: 10.1016/j.cmpb.2009.04.003. Epub 2009 May 6.

PMID:
19423179
[PubMed - indexed for MEDLINE]
20.

Mass spectrometry is only one piece of the puzzle in clinical proteomics.

McGuire JN, Overgaard J, Pociot F.

Brief Funct Genomic Proteomic. 2008 Jan;7(1):74-83. doi: 10.1093/bfgp/eln005. Epub 2008 Feb 28. Review.

PMID:
18308835
[PubMed - indexed for MEDLINE]
Free Article

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