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Results: 1 to 20 of 98

1.

Network dynamics.

Sauro HM.

Methods Mol Biol. 2009;541:269. doi: 10.1007/978-1-59745-243-4_13. Review.

PMID:
19381543
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Multistability and oscillations in genetic control of metabolism.

Oyarzún DA, Chaves M, Hoff-Hoffmeyer-Zlotnik M.

J Theor Biol. 2012 Feb 21;295:139-53. doi: 10.1016/j.jtbi.2011.11.017. Epub 2011 Nov 26.

PMID:
22137968
[PubMed - indexed for MEDLINE]
3.

Trade-off between responsiveness and noise suppression in biomolecular system responses to environmental cues.

Ratushny AV, Shmulevich I, Aitchison JD.

PLoS Comput Biol. 2011 Jun;7(6):e1002091. doi: 10.1371/journal.pcbi.1002091. Epub 2011 Jun 30.

PMID:
21738459
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of discrete bioregulatory networks using symbolic steady states.

Siebert H.

Bull Math Biol. 2011 Apr;73(4):873-98. doi: 10.1007/s11538-010-9609-1. Epub 2010 Dec 18.

PMID:
21170598
[PubMed - indexed for MEDLINE]
5.

Differential gene expression regulated by oscillatory transcription factors.

Cerone L, Neufeld Z.

PLoS One. 2012;7(1):e30283. doi: 10.1371/journal.pone.0030283. Epub 2012 Jan 24.

PMID:
22291930
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

On the estimation of robustness and filtering ability of dynamic biochemical networks under process delays, internal parametric perturbations and external disturbances.

Chen BS, Chen PW.

Math Biosci. 2009 Dec;222(2):92-108. doi: 10.1016/j.mbs.2009.09.004. Epub 2009 Sep 27.

PMID:
19788895
[PubMed - indexed for MEDLINE]
7.

Design principles of biochemical oscillators.

Novák B, Tyson JJ.

Nat Rev Mol Cell Biol. 2008 Dec;9(12):981-91. doi: 10.1038/nrm2530. Epub 2008 Oct 30. Review.

PMID:
18971947
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Computational approaches to the topology, stability and dynamics of metabolic networks.

Steuer R.

Phytochemistry. 2007 Aug-Sep;68(16-18):2139-51. Epub 2007 Jun 14.

PMID:
17574639
[PubMed - indexed for MEDLINE]
9.

Onset of synchronization in complex gradient networks.

Wang X, Huang L, Guan S, Lai YC, Lai CH.

Chaos. 2008 Sep;18(3):037117. doi: 10.1063/1.2964202.

PMID:
19045491
[PubMed - indexed for MEDLINE]
10.

Cluster synchronization in oscillatory networks.

Belykh VN, Osipov GV, Petrov VS, Suykens JA, Vandewalle J.

Chaos. 2008 Sep;18(3):037106. doi: 10.1063/1.2956986.

PMID:
19045480
[PubMed - indexed for MEDLINE]
11.

Analysis of a minimal model for p53 oscillations.

Bottani S, Grammaticos B.

J Theor Biol. 2007 Nov 21;249(2):235-45. Epub 2007 Jul 26.

PMID:
17850824
[PubMed - indexed for MEDLINE]
12.

A partial synchronization theorem.

Pogromsky AY.

Chaos. 2008 Sep;18(3):037107. doi: 10.1063/1.2959145. Erratum in: Chaos. 2009 Dec;19(4):049901.

PMID:
19045481
[PubMed - indexed for MEDLINE]
13.

Multistability, oscillations and bifurcations in feedback loops.

Leite MC, Wang Y.

Math Biosci Eng. 2010 Jan;7(1):83-97. doi: 10.3934/mbe.2010.7.83.

PMID:
20104950
[PubMed - indexed for MEDLINE]
14.

Coupling between feedback loops in autoregulatory networks affects bistability range, open-loop gain and switching times.

Tiwari A, Igoshin OA.

Phys Biol. 2012 Oct;9(5):055003. doi: 10.1088/1478-3975/9/5/055003. Epub 2012 Sep 25.

PMID:
23011599
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Rewiring networks for synchronization.

Hagberg A, Schult DA.

Chaos. 2008 Sep;18(3):037105. doi: 10.1063/1.2975842.

PMID:
19045479
[PubMed - indexed for MEDLINE]
16.

Synchronization properties of network motifs: influence of coupling delay and symmetry.

D'Huys O, Vicente R, Erneux T, Danckaert J, Fischer I.

Chaos. 2008 Sep;18(3):037116. doi: 10.1063/1.2953582.

PMID:
19045490
[PubMed - indexed for MEDLINE]
17.

Synchronization of complex networks through local adaptive coupling.

De Lellis P, di Bernardo M, Garofalo F.

Chaos. 2008 Sep;18(3):037110. doi: 10.1063/1.2944236.

PMID:
19045484
[PubMed - indexed for MEDLINE]
18.

Algebraic models of biochemical networks.

Laubenbacher R, Jarrah AS.

Methods Enzymol. 2009;467:163-96. doi: 10.1016/S0076-6879(09)67007-5.

PMID:
19897093
[PubMed - indexed for MEDLINE]
19.

Slow activator degradation reduces the robustness of a coupled feedback loop oscillator.

Sayut DJ, Sun L.

Mol Biosyst. 2010 Aug;6(8):1469-74. doi: 10.1039/c003480k. Epub 2010 May 27.

PMID:
20505881
[PubMed - indexed for MEDLINE]
20.

Metabolic robustness and network modularity: a model study.

Holme P.

PLoS One. 2011 Feb 2;6(2):e16605. doi: 10.1371/journal.pone.0016605.

PMID:
21311770
[PubMed - indexed for MEDLINE]
Free PMC Article

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