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Results: 1 to 20 of 101

Similar articles for PubMed (Select 19377475)

1.

The regulated retrotransposon transcriptome of mammalian cells.

Faulkner GJ, Kimura Y, Daub CO, Wani S, Plessy C, Irvine KM, Schroder K, Cloonan N, Steptoe AL, Lassmann T, Waki K, Hornig N, Arakawa T, Takahashi H, Kawai J, Forrest AR, Suzuki H, Hayashizaki Y, Hume DA, Orlando V, Grimmond SM, Carninci P.

Nat Genet. 2009 May;41(5):563-71. doi: 10.1038/ng.368. Epub 2009 Apr 19.

PMID:
19377475
2.

Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons.

Mourier T, Willerslev E.

BMC Genomics. 2010 Mar 12;11:167. doi: 10.1186/1471-2164-11-167.

3.

Evolutionary origin and functions of retrogene introns.

Fablet M, Bueno M, Potrzebowski L, Kaessmann H.

Mol Biol Evol. 2009 Sep;26(9):2147-56. doi: 10.1093/molbev/msp125. Epub 2009 Jun 24.

4.

Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells.

Reichmann J, Crichton JH, Madej MJ, Taggart M, Gautier P, Garcia-Perez JL, Meehan RR, Adams IR.

PLoS Comput Biol. 2012;8(4):e1002486. doi: 10.1371/journal.pcbi.1002486. Epub 2012 Apr 26.

5.

The frequent transcriptional readthrough of the tobacco Tnt1 retrotransposon and its possible implications for the control of resistance genes.

Hernández-Pinzón I, de Jesús E, Santiago N, Casacuberta JM.

J Mol Evol. 2009 Mar;68(3):269-78. doi: 10.1007/s00239-009-9204-y. Epub 2009 Feb 17.

PMID:
19221683
6.

Retrotransposons and non-protein coding RNAs.

Mourier T, Willerslev E.

Brief Funct Genomic Proteomic. 2009 Nov;8(6):493-501. doi: 10.1093/bfgp/elp036. Epub 2009 Sep 3. Review.

7.

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes.

Watanabe T, Totoki Y, Toyoda A, Kaneda M, Kuramochi-Miyagawa S, Obata Y, Chiba H, Kohara Y, Kono T, Nakano T, Surani MA, Sakaki Y, Sasaki H.

Nature. 2008 May 22;453(7194):539-43. doi: 10.1038/nature06908. Epub 2008 Apr 10.

PMID:
18404146
8.

The RNA continent.

Yasuda J, Hayashizaki Y.

Adv Cancer Res. 2008;99:77-112. Review.

PMID:
18037407
9.

The BARE-1 retrotransposon is transcribed in barley from an LTR promoter active in transient assays.

Suoniemi A, Narvanto A, Schulman AH.

Plant Mol Biol. 1996 May;31(2):295-306.

PMID:
8756594
10.

Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes.

Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H.

Genes Dev. 2006 Jul 1;20(13):1732-43. Epub 2006 Jun 9.

11.

L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells.

Yang N, Kazazian HH Jr.

Nat Struct Mol Biol. 2006 Sep;13(9):763-71. Epub 2006 Aug 27.

PMID:
16936727
12.

Many human genes are transcribed from the antisense promoter of L1 retrotransposon.

Nigumann P, Redik K, Mätlik K, Speek M.

Genomics. 2002 May;79(5):628-34.

PMID:
11991712
13.

Cerebral ischemia induces neuronal expression of novel VL30 mouse retrotransposons bound to polyribosomes.

Costain WJ, Rasquinha I, Graber T, Luebbert C, Preston E, Slinn J, Xie X, MacManus JP.

Brain Res. 2006 Jun 13;1094(1):24-37. Epub 2006 May 30.

PMID:
16730676
14.

Analysis of the promoter from an expanding mouse retrotransposon subfamily.

DeBerardinis RJ, Kazazian HH Jr.

Genomics. 1999 Mar 15;56(3):317-23.

PMID:
10087199
15.

BARE retrotransposons produce multiple groups of rarely polyadenylated transcripts from two differentially regulated promoters.

Chang W, Schulman AH.

Plant J. 2008 Oct;56(1):40-50. doi: 10.1111/j.1365-313X.2008.03572.x. Epub 2008 Jun 10.

PMID:
18547398
16.

Picking pyknons out of the human genome.

Meynert A, Birney E.

Cell. 2006 Jun 2;125(5):836-8. Review.

17.

Structural organization of the human complexin 2 gene (CPLX2) and aspects of its functional activity.

Raevskaya NM, Dergunova LV, Vladychenskaya IP, Stavchansky VV, Oborina MV, Poltaraus AB, Limborska SA.

Gene. 2005 Oct 10;359:127-37.

PMID:
16162394
18.
19.

DeepSAGE reveals genetic variants associated with alternative polyadenylation and expression of coding and non-coding transcripts.

Zhernakova DV, de Klerk E, Westra HJ, Mastrokolias A, Amini S, Ariyurek Y, Jansen R, Penninx BW, Hottenga JJ, Willemsen G, de Geus EJ, Boomsma DI, Veldink JH, van den Berg LH, Wijmenga C, den Dunnen JT, van Ommen GJ, 't Hoen PA, Franke L.

PLoS Genet. 2013 Jun;9(6):e1003594. doi: 10.1371/journal.pgen.1003594. Epub 2013 Jun 20. Erratum in: PLoS Genet. 2013 Sep;9(9). doi: 10.1371/annotation/296056cb-f80c-4b04-985b-180f6d3cc4ae.

20.

Constructing the landscape of the mammalian transcriptome.

Carninci P.

J Exp Biol. 2007 May;210(Pt 9):1497-506.

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