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Results: 1 to 20 of 75

Similar articles for PubMed (Select 19351901)

1.

A stochastic spectral analysis of transcriptional regulatory cascades.

Walczak AM, Mugler A, Wiggins CH.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6529-34. doi: 10.1073/pnas.0811999106. Epub 2009 Apr 7.

2.

Spectral solutions to stochastic models of gene expression with bursts and regulation.

Mugler A, Walczak AM, Wiggins CH.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 1):041921. Epub 2009 Oct 20.

3.

Reconstructing nonlinear dynamic models of gene regulation using stochastic sampling.

Mazur J, Ritter D, Reinelt G, Kaderali L.

BMC Bioinformatics. 2009 Dec 28;10:448. doi: 10.1186/1471-2105-10-448.

4.

Context-dependent transcriptional regulations between signal transduction pathways.

Hwang S, Kim S, Shin H, Lee D.

BMC Bioinformatics. 2011 Jan 13;12:19. doi: 10.1186/1471-2105-12-19.

5.

An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks.

Ching WK, Zhang S, Ng MK, Akutsu T.

Bioinformatics. 2007 Jun 15;23(12):1511-8. Epub 2007 Apr 26.

6.

Modeling signaling networks with different formalisms: a preview.

MacNamara A, Henriques D, Saez-Rodriguez J.

Methods Mol Biol. 2013;1021:89-105. doi: 10.1007/978-1-62703-450-0_5.

PMID:
23715981
8.

Modeling regulatory networks with weight matrices.

Weaver DC, Workman CT, Stormo GD.

Pac Symp Biocomput. 1999:112-23.

9.

Simulation study in Probabilistic Boolean Network models for genetic regulatory networks.

Zhang SQ, Ching WK, Ng MK, Akutsu T.

Int J Data Min Bioinform. 2007;1(3):217-40.

PMID:
18399072
10.

Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic.

Khan FM, Schmitz U, Nikolov S, Engelmann D, Pützer BM, Wolkenhauer O, Vera J.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):289-98. doi: 10.1016/j.bbapap.2013.05.007. Epub 2013 May 18.

PMID:
23692959
12.

Attenuation of noise in ultrasensitive signaling cascades.

Thattai M, van Oudenaarden A.

Biophys J. 2002 Jun;82(6):2943-50.

13.

Transcriptional control in the segmentation gene network of Drosophila.

Schroeder MD, Pearce M, Fak J, Fan H, Unnerstall U, Emberly E, Rajewsky N, Siggia ED, Gaul U.

PLoS Biol. 2004 Sep;2(9):E271. Epub 2004 Aug 31.

14.

Mammalian synthetic biology: engineering of sophisticated gene networks.

Greber D, Fussenegger M.

J Biotechnol. 2007 Jul 15;130(4):329-45. Epub 2007 May 24. Review.

PMID:
17602777
15.
16.

Signal propagation in nonlinear stochastic gene regulatory networks.

Achimescu S, Lipan O.

Syst Biol (Stevenage). 2006 May;153(3):120-34.

PMID:
16984086
17.

Distributions for negative-feedback-regulated stochastic gene expression: dimension reduction and numerical solution of the chemical master equation.

Zeron ES, Santillán M.

J Theor Biol. 2010 May 21;264(2):377-85. doi: 10.1016/j.jtbi.2010.02.004. Epub 2010 Feb 6.

PMID:
20144620
18.

Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes.

Balestrieri C, Alberghina L, Vanoni M, Chiaradonna F.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S1. doi: 10.1186/1471-2105-10-S12-S1.

19.

Transient dynamics of reduced-order models of genetic regulatory networks.

Pal R, Bhattacharya S.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1230-44. doi: 10.1109/TCBB.2012.37.

PMID:
22411891
20.

Steady-state expression of self-regulated genes.

Fournier T, Gabriel JP, Mazza C, Pasquier J, Galbete JL, Mermod N.

Bioinformatics. 2007 Dec 1;23(23):3185-92. Epub 2007 Oct 12.

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