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Results: 1 to 20 of 235

1.

A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge.

Chua HN, Hugo W, Liu G, Li X, Wong L, Ng SK.

Ann N Y Acad Sci. 2009 Mar;1158:224-33. doi: 10.1111/j.1749-6632.2008.03760.x.

PMID:
19348644
[PubMed - indexed for MEDLINE]
2.

Filtering high-throughput protein-protein interaction data using a combination of genomic features.

Patil A, Nakamura H.

BMC Bioinformatics. 2005 Apr 18;6:100.

PMID:
15833142
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae.

Joshi T, Chen Y, Becker JM, Alexandrov N, Xu D.

OMICS. 2004 Winter;8(4):322-33.

PMID:
15703479
[PubMed - indexed for MEDLINE]
4.

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M.

Science. 2003 Oct 17;302(5644):449-53.

PMID:
14564010
[PubMed - indexed for MEDLINE]
Free Article
5.

Integrating functional genomics data.

Lee I, Marcotte EM.

Methods Mol Biol. 2008;453:267-78. doi: 10.1007/978-1-60327-429-6_14.

PMID:
18712309
[PubMed - indexed for MEDLINE]
6.

Functional centrality: detecting lethality of proteins in protein interaction networks.

Tew KL, Li XL, Tan SH.

Genome Inform. 2007;19:166-77.

PMID:
18546514
[PubMed - indexed for MEDLINE]
7.

Protein function prediction with the shortest path in functional linkage graph and boosting.

Zhao XM, Chen L, Aihara K.

Int J Bioinform Res Appl. 2008;4(4):375-84.

PMID:
19008182
[PubMed - indexed for MEDLINE]
8.

Protein complex prediction based on mutually exclusive interactions in protein interaction network.

Jung SH, Jang WH, Hur HY, Hyun B, Han DS.

Genome Inform. 2008;21:77-88.

PMID:
19425149
[PubMed - indexed for MEDLINE]
Free Article
9.

Analyzing yeast protein-protein interaction data obtained from different sources.

Bader GD, Hogue CW.

Nat Biotechnol. 2002 Oct;20(10):991-7.

PMID:
12355115
[PubMed - indexed for MEDLINE]
10.

Mapping genetically compensatory pathways from synthetic lethal interactions in yeast.

Ma X, Tarone AM, Li W.

PLoS One. 2008 Apr 9;3(4):e1922. doi: 10.1371/journal.pone.0001922.

PMID:
18398455
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identifying protein complexes using hybrid properties.

Chen L, Shi X, Kong X, Zeng Z, Cai YD.

J Proteome Res. 2009 Nov;8(11):5212-8. doi: 10.1021/pr900554a.

PMID:
19764809
[PubMed - indexed for MEDLINE]
12.

Supervised enzyme network inference from the integration of genomic data and chemical information.

Yamanishi Y, Vert JP, Kanehisa M.

Bioinformatics. 2005 Jun;21 Suppl 1:i468-77.

PMID:
15961492
[PubMed - indexed for MEDLINE]
Free Article
13.

Social behavior of the yeast protein-protein interaction network.

Seshasayee AS.

In Silico Biol. 2006;6(1-2):127-30.

PMID:
16789919
[PubMed - indexed for MEDLINE]
14.

Confirmation of organized modularity in the yeast interactome.

Bertin N, Simonis N, Dupuy D, Cusick ME, Han JD, Fraser HB, Roth FP, Vidal M.

PLoS Biol. 2007 Jun;5(6):e153. No abstract available.

PMID:
17564493
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Predicting phenotypic variation in yeast from individual genome sequences.

Jelier R, Semple JI, Garcia-Verdugo R, Lehner B.

Nat Genet. 2011 Nov 13;43(12):1270-4. doi: 10.1038/ng.1007.

PMID:
22081227
[PubMed - indexed for MEDLINE]
16.

Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.

Ray SS, Bandyopadhyay S, Pal SK.

IEEE Trans Biomed Eng. 2009 Feb;56(2):229-36. doi: 10.1109/TBME.2008.2005955. Epub 2008 Sep 30.

PMID:
19272921
[PubMed - indexed for MEDLINE]
17.

Predicting protein-protein interactions from protein domains using a set cover approach.

Huang C, Morcos F, Kanaan SP, Wuchty S, Chen DZ, Izaguirre JA.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):78-87.

PMID:
17277415
[PubMed - indexed for MEDLINE]
18.

Pushing structural information into the yeast interactome by high-throughput protein docking experiments.

Mosca R, Pons C, Fernández-Recio J, Aloy P.

PLoS Comput Biol. 2009 Aug;5(8):e1000490. doi: 10.1371/journal.pcbi.1000490. Epub 2009 Aug 28.

PMID:
19714207
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality.

Saito R, Suzuki H, Hayashizaki Y.

Biochem Biophys Res Commun. 2003 Feb 14;301(3):633-40.

PMID:
12565826
[PubMed - indexed for MEDLINE]
20.

Assessment of protein set coherence using functional annotations.

Chagoyen M, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2008 Oct 20;9:444. doi: 10.1186/1471-2105-9-444.

PMID:
18937846
[PubMed - indexed for MEDLINE]
Free PMC Article

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