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Results: 1 to 20 of 106

1.

Bayesian clustering and feature selection for cancer tissue samples.

Marttinen P, Myllykangas S, Corander J.

BMC Bioinformatics. 2009 Mar 18;10:90. doi: 10.1186/1471-2105-10-90.

PMID:
19296858
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.

Corander J, Marttinen P, Sirén J, Tang J.

BMC Bioinformatics. 2008 Dec 16;9:539. doi: 10.1186/1471-2105-9-539.

PMID:
19087322
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bayesian semi-supervised classification of bacterial samples using MLST databases.

Cheng L, Connor TR, Aanensen DM, Spratt BG, Corander J.

BMC Bioinformatics. 2011 Jul 26;12:302. doi: 10.1186/1471-2105-12-302.

PMID:
21791094
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Modeling and visualizing uncertainty in gene expression clusters using dirichlet process mixtures.

Rasmussen CE, de la Cruz BJ, Ghahramani Z, Wild DL.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Oct-Dec;6(4):615-28. doi: 10.1109/TCBB.2007.70269.

PMID:
19875860
[PubMed - indexed for MEDLINE]
5.

Bayesian model-based clustering of temporal gene expression using autoregressive panel data approach.

Nascimento M, Sáfadi T, Fonseca e Silva F, Nascimento AC.

Bioinformatics. 2012 Aug 1;28(15):2004-7. doi: 10.1093/bioinformatics/bts322. Epub 2012 Jun 4.

PMID:
22668790
[PubMed - indexed for MEDLINE]
Free Article
6.

Nonlinear dimensionality reduction of gene expression data for visualization and clustering analysis of cancer tissue samples.

Shi J, Luo Z.

Comput Biol Med. 2010 Aug;40(8):723-32. doi: 10.1016/j.compbiomed.2010.06.007. Epub 2010 Jul 16.

PMID:
20637456
[PubMed - indexed for MEDLINE]
7.

The latent process decomposition of cDNA microarray data sets.

Rogers S, Girolami M, Campbell C, Breitling R.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Apr-Jun;2(2):143-56.

PMID:
17044179
[PubMed - indexed for MEDLINE]
8.

ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles.

Yoshida R, Higuchi T, Imoto S, Miyano S.

Bioinformatics. 2006 Jun 15;22(12):1538-9. Epub 2006 Apr 10.

PMID:
16606685
[PubMed - indexed for MEDLINE]
Free Article
9.

Identifying currents in the gene pool for bacterial populations using an integrative approach.

Tang J, Hanage WP, Fraser C, Corander J.

PLoS Comput Biol. 2009 Aug;5(8):e1000455. doi: 10.1371/journal.pcbi.1000455. Epub 2009 Aug 7.

PMID:
19662158
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Simultaneous gene clustering and subset selection for sample classification via MDL.

Jörnsten R, Yu B.

Bioinformatics. 2003 Jun 12;19(9):1100-9.

PMID:
12801870
[PubMed - indexed for MEDLINE]
Free Article
11.

A novel approach for clustering proteomics data using Bayesian fast Fourier transform.

Bensmail H, Golek J, Moody MM, Semmes JO, Haoudi A.

Bioinformatics. 2005 May 15;21(10):2210-24. Epub 2005 Mar 15.

PMID:
15769836
[PubMed - indexed for MEDLINE]
Free Article
12.

An efficient statistical feature selection approach for classification of gene expression data.

Chandra B, Gupta M.

J Biomed Inform. 2011 Aug;44(4):529-35. doi: 10.1016/j.jbi.2011.01.001. Epub 2011 Jan 15.

PMID:
21241823
[PubMed - indexed for MEDLINE]
Free Article
13.

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.

Shen R, Olshen AB, Ladanyi M.

Bioinformatics. 2009 Nov 15;25(22):2906-12. doi: 10.1093/bioinformatics/btp543. Epub 2009 Sep 16. Erratum in: Bioinformatics. 2010 Jan 15;26(2):292-3.

PMID:
19759197
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.

Maruschke M, Reuter D, Koczan D, Hakenberg OW, Thiesen HJ.

BJU Int. 2011 Jul;108(2 Pt 2):E29-35. doi: 10.1111/j.1464-410X.2010.09794.x. Epub 2011 Mar 16.

PMID:
21435154
[PubMed - indexed for MEDLINE]
15.

T-BAPS: a Bayesian statistical tool for comparison of microbial communities using terminal-restriction fragment length polymorphism (T-RFLP) data.

Tang J, Tao J, Urakawa H, Corander J.

Stat Appl Genet Mol Biol. 2007;6:Article30. Epub 2007 Nov 6.

PMID:
18052913
[PubMed - indexed for MEDLINE]
16.

Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes.

Grzegorczyk M, Husmeier D.

Bioinformatics. 2011 Mar 1;27(5):693-9. doi: 10.1093/bioinformatics/btq711. Epub 2010 Dec 21.

PMID:
21177328
[PubMed - indexed for MEDLINE]
Free Article
17.

R/BHC: fast Bayesian hierarchical clustering for microarray data.

Savage RS, Heller K, Xu Y, Ghahramani Z, Truman WM, Grant M, Denby KJ, Wild DL.

BMC Bioinformatics. 2009 Aug 6;10:242. doi: 10.1186/1471-2105-10-242.

PMID:
19660130
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

SVM-RFE with MRMR filter for gene selection.

Mundra PA, Rajapakse JC.

IEEE Trans Nanobioscience. 2010 Mar;9(1):31-7. doi: 10.1109/TNB.2009.2035284. Epub 2009 Oct 30.

PMID:
19884101
[PubMed - indexed for MEDLINE]
19.

A Bayesian segmentation approach to ascertain copy number variations at the population level.

Wu LY, Chipman HA, Bull SB, Briollais L, Wang K.

Bioinformatics. 2009 Jul 1;25(13):1669-79. doi: 10.1093/bioinformatics/btp270. Epub 2009 Apr 23.

PMID:
19389735
[PubMed - indexed for MEDLINE]
Free Article
20.

Knowledge based cluster ensemble for cancer discovery from biomolecular data.

Yu Z, Wongb HS, You J, Yang Q, Liao H.

IEEE Trans Nanobioscience. 2011 Jun;10(2):76-85. doi: 10.1109/TNB.2011.2144997. Epub 2011 Jul 7.

PMID:
21742574
[PubMed - indexed for MEDLINE]

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