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Items: 1 to 20 of 84

1.

Exploring the human genome with functional maps.

Huttenhower C, Haley EM, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG.

Genome Res. 2009 Jun;19(6):1093-106. doi: 10.1101/gr.082214.108. Epub 2009 Feb 26.

2.

Disruption of AP3B1 by a chromosome 5 inversion: a new disease mechanism in Hermansky-Pudlak syndrome type 2.

Jones ML, Murden SL, Brooks C, Maloney V, Manning RA, Gilmour KC, Bharadwaj V, de la Fuente J, Chakravorty S, Mumford AD.

BMC Med Genet. 2013 Apr 4;14:42. doi: 10.1186/1471-2350-14-42.

3.

A genomewide functional network for the laboratory mouse.

Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000165. doi: 10.1371/journal.pcbi.1000165.

4.

Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes.

Balestrieri C, Alberghina L, Vanoni M, Chiaradonna F.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S1. doi: 10.1186/1471-2105-10-S12-S1.

5.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

6.

Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain.

Ng L, Pathak SD, Kuan C, Lau C, Dong H, Sodt A, Dang C, Avants B, Yushkevich P, Gee JC, Haynor D, Lein E, Jones A, Hawrylycz M.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jul-Sep;4(3):382-93.

PMID:
17666758
7.

Systematic discovery of functional modules and context-specific functional annotation of human genome.

Huang Y, Li H, Hu H, Yan X, Waterman MS, Huang H, Zhou XJ.

Bioinformatics. 2007 Jul 1;23(13):i222-9.

8.
9.

The evolution of signaling complexity suggests a mechanism for reducing the genomic search space in human association studies.

Irizarry KJ, Merriman B, Bahamonde ME, Wong ML, Licinio J.

Mol Psychiatry. 2005 Jan;10(1):14-26. Review.

PMID:
15618953
12.

Gene set internal coherence in the context of functional profiling.

Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

BMC Genomics. 2009 Apr 27;10:197. doi: 10.1186/1471-2164-10-197.

13.
14.

Novel functional view of the crocidolite asbestos-treated A549 human lung epithelial transcriptome reveals an intricate network of pathways with opposing functions.

Hevel JM, Olson-Buelow LC, Ganesan B, Stevens JR, Hardman JP, Aust AE.

BMC Genomics. 2008 Aug 7;9:376. doi: 10.1186/1471-2164-9-376.

15.

Gene expression trends and protein features effectively complement each other in gene function prediction.

Wabnik K, Hvidsten TR, Kedzierska A, Van Leene J, De Jaeger G, Beemster GT, Komorowski J, Kuiper MT.

Bioinformatics. 2009 Feb 1;25(3):322-30. doi: 10.1093/bioinformatics/btn625. Epub 2008 Dec 2.

16.

Toward a cDNA map of the human genome.

Korenberg JR, Chen XN, Adams MD, Venter JC.

Genomics. 1995 Sep 20;29(2):364-70.

PMID:
8666383
17.

Accounting for redundancy when integrating gene interaction databases.

Elefsinioti A, Ackermann M, Beyer A.

PLoS One. 2009 Oct 22;4(10):e7492. doi: 10.1371/journal.pone.0007492.

18.

From genes to functional classes in the study of biological systems.

Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Mínguez P, Montaner D, Dopazo J.

BMC Bioinformatics. 2007 Apr 3;8:114.

19.

GOLD.db: genomics of lipid-associated disorders database.

Hackl H, Maurer M, Mlecnik B, Hartler J, Stocker G, Miranda-Saavedra D, Trajanoski Z.

BMC Genomics. 2004 Dec 10;5(1):93.

20.

Probabilistic model of the human protein-protein interaction network.

Rhodes DR, Tomlins SA, Varambally S, Mahavisno V, Barrette T, Kalyana-Sundaram S, Ghosh D, Pandey A, Chinnaiyan AM.

Nat Biotechnol. 2005 Aug;23(8):951-9.

PMID:
16082366
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