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Results: 1 to 20 of 497

1.

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.

PMID:
19243610
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, Stamatoyannopoulos JA.

Nat Methods. 2006 Jul;3(7):511-8.

PMID:
16791208
[PubMed - indexed for MEDLINE]
3.

A novel non-coding DNA family in Caenorhabditis elegans.

Takashima Y, Bando T, Kagawa H.

Gene. 2007 Feb 15;388(1-2):61-73. Epub 2006 Oct 14.

PMID:
17134856
[PubMed - indexed for MEDLINE]
4.

The regulatory content of intergenic DNA shapes genome architecture.

Nelson CE, Hersh BM, Carroll SB.

Genome Biol. 2004;5(4):R25. Epub 2004 Mar 15.

PMID:
15059258
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30.

PMID:
18611272
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).

Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D, Zhou D, Luo S, Vasicek TJ, Daly MJ, Wolfsberg TG, Collins FS.

Genome Res. 2006 Jan;16(1):123-31. Epub 2005 Dec 12.

PMID:
16344561
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.

Rambaldi D, Guffanti A, Morandi P, Cassata G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S22.

PMID:
16351749
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Conservation of sequence and function of the pag-3 genes from C. elegans and C. briggsae.

Aamodt E, Shen L, Marra M, Schein J, Rose B, McDermott JB.

Gene. 2000 Feb 8;243(1-2):67-74.

PMID:
10675614
[PubMed - indexed for MEDLINE]
9.

Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.

He H, Wang J, Liu T, Liu XS, Li T, Wang Y, Qian Z, Zheng H, Zhu X, Wu T, Shi B, Deng W, Zhou W, Skogerbø G, Chen R.

Genome Res. 2007 Oct;17(10):1471-7. Epub 2007 Sep 4.

PMID:
17785534
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Molecular cloning and chromatin structure analysis of the murine alpha1(I) collagen gene domain.

Salimi-Tari P, Cheung M, Safar CA, Tracy JT, Tran I, Harbers K, Breindl M.

Gene. 1997 Oct 1;198(1-2):61-72.

PMID:
9370265
[PubMed - indexed for MEDLINE]
11.

Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment.

Kent WJ, Zahler AM.

Genome Res. 2000 Aug;10(8):1115-25.

PMID:
10958630
[PubMed - indexed for MEDLINE]
Free Article
12.

Pattern of selective constraint in C. elegans and C. briggsae genomes.

Shabalina SA, Kondrashov AS.

Genet Res. 1999 Aug;74(1):23-30.

PMID:
10505405
[PubMed - indexed for MEDLINE]
13.

Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.

Missal K, Zhu X, Rose D, Deng W, Skogerbø G, Chen R, Stadler PF.

J Exp Zool B Mol Dev Evol. 2006 Jul 15;306(4):379-92.

PMID:
16425273
[PubMed - indexed for MEDLINE]
14.

Genome-wide analysis of sex-enriched gene expression during C. elegans larval development.

Thoemke K, Yi W, Ross JM, Kim S, Reinke V, Zarkower D.

Dev Biol. 2005 Aug 15;284(2):500-8.

PMID:
15987632
[PubMed - indexed for MEDLINE]
Free Article
15.

Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells.

Wang YM, Zhou P, Wang LY, Li ZH, Zhang YN, Zhang YX.

PLoS One. 2012;7(8):e42414. doi: 10.1371/journal.pone.0042414. Epub 2012 Aug 10.

PMID:
22900019
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Analysis of DNase-I-hypersensitive sites at the 3' end of the cystic fibrosis transmembrane conductance regulator gene (CFTR).

Nuthall HN, Moulin DS, Huxley C, Harris A.

Biochem J. 1999 Aug 1;341 ( Pt 3):601-11.

PMID:
10417323
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Association of the matrix attachment region recognition signature with coding regions in Caenorhabditis elegans.

Anthony A, Blaxter M.

BMC Genomics. 2007 Nov 15;8:418.

PMID:
18005410
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Pentamer vocabularies characterizing introns and intron-like intergenic tracts from Caenorhabditis elegans and Drosophila melanogaster.

Bultrini E, Pizzi E, Del Giudice P, Frontali C.

Gene. 2003 Jan 30;304:183-92.

PMID:
12568727
[PubMed - indexed for MEDLINE]
19.

Genomics in C. elegans: so many genes, such a little worm.

Hillier LW, Coulson A, Murray JI, Bao Z, Sulston JE, Waterston RH.

Genome Res. 2005 Dec;15(12):1651-60. Review.

PMID:
16339362
[PubMed - indexed for MEDLINE]
Free Article
20.

Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).

Shibata Y, Crawford GE.

Methods Mol Biol. 2009;556:177-90. doi: 10.1007/978-1-60327-192-9_13.

PMID:
19488879
[PubMed - indexed for MEDLINE]

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