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Items: 1 to 20 of 181


Identification of an active LTR retrotransposon in rice.

Picault N, Chaparro C, Piegu B, Stenger W, Formey D, Llauro C, Descombin J, Sabot F, Lasserre E, Meynard D, Guiderdoni E, Panaud O.

Plant J. 2009 Jun;58(5):754-65. doi: 10.1111/j.1365-313X.2009.03813.x. Epub 2009 Feb 2. Erratum in: Plant J. 2009 Dec;60(5):929.


Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus.

Petit J, Bourgeois E, Stenger W, Bès M, Droc G, Meynard D, Courtois B, Ghesquière A, Sabot F, Panaud O, Guiderdoni E.

Mol Genet Genomics. 2009 Dec;282(6):633-52. doi: 10.1007/s00438-009-0493-z. Epub 2009 Oct 25.


Transpositional reactivation of two LTR retrotransposons in rice-Zizania recombinant inbred lines (RILs).

Wang HY, Tian Q, Ma YQ, Wu Y, Miao GJ, Ma Y, Cao DH, Wang XL, Lin C, Pang J, Liu B.

Hereditas. 2010 Dec;147(6):264-77. doi: 10.1111/j.1601-5223.2010.02181.x. Epub 2010 Nov 18.


LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice.

Wang H, Liu JS.

BMC Genomics. 2008 Aug 10;9:382. doi: 10.1186/1471-2164-9-382.


Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes.

Noma K, Ohtsubo E, Ohtsubo H.

Mol Gen Genet. 1999 Feb;261(1):71-9.


Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.

Roulin A, Piegu B, Wing RA, Panaud O.

Plant J. 2008 Mar;53(6):950-9. Epub 2007 Dec 6.


Retrotranspositions in orthologous regions of closely related grass species.

Du C, Swigonová Z, Messing J.

BMC Evol Biol. 2006 Aug 16;6:62.


Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae.

Roulin A, Piegu B, Fortune PM, Sabot F, D'Hont A, Manicacci D, Panaud O.

BMC Evol Biol. 2009 Mar 16;9:58. doi: 10.1186/1471-2148-9-58.


RetrOryza: a database of the rice LTR-retrotransposons.

Chaparro C, Guyot R, Zuccolo A, Piégu B, Panaud O.

Nucleic Acids Res. 2007 Jan;35(Database issue):D66-70. Epub 2006 Oct 28.


Transposable element annotation of the rice genome.

Juretic N, Bureau TE, Bruskiewich RM.

Bioinformatics. 2004 Jan 22;20(2):155-60.


Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

Tian Z, Rizzon C, Du J, Zhu L, Bennetzen JL, Jackson SA, Gaut BS, Ma J.

Genome Res. 2009 Dec;19(12):2221-30. doi: 10.1101/gr.083899.108. Epub 2009 Sep 29.


Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA).

Panaud O, Vitte C, Hivert J, Muzlak S, Talag J, Brar D, Sarr A.

Mol Genet Genomics. 2002 Sep;268(1):113-21. Epub 2002 Aug 10.


Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.

Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA.

BMC Genomics. 2011 Mar 8;12:142. doi: 10.1186/1471-2164-12-142.


Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons.

Mourier T, Willerslev E.

BMC Genomics. 2010 Mar 12;11:167. doi: 10.1186/1471-2164-11-167.


Rice transposable elements are characterized by various methylation environments in the genome.

Takata M, Kiyohara A, Takasu A, Kishima Y, Ohtsubo H, Sano Y.

BMC Genomics. 2007 Dec 20;8:469.


Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice.

Ma J, Devos KM, Bennetzen JL.

Genome Res. 2004 May;14(5):860-9. Epub 2004 Apr 12.


Recent retrotransposon insertions are methylated and phylogenetically clustered in japonica rice (Oryza sativa spp. japonica).

Vonholdt BM, Takuno S, Gaut BS.

Mol Biol Evol. 2012 Oct;29(10):3193-203. Epub 2012 May 15.

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