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Infection and genotype remodel the entire soybean transcriptome.

Zhou L, Mideros SX, Bao L, Hanlon R, Arredondo FD, Tripathy S, Krampis K, Jerauld A, Evans C, St Martin SK, Maroof MA, Hoeschele I, Dorrance AE, Tyler BM.

BMC Genomics. 2009 Jan 26;10:49. doi: 10.1186/1471-2164-10-49.


Patterns of gene expression upon infection of soybean plants by Phytophthora sojae.

Moy P, Qutob D, Chapman BP, Atkinson I, Gijzen M.

Mol Plant Microbe Interact. 2004 Oct;17(10):1051-62.


Microarray profiling reveals microRNAs involving soybean resistance to Phytophthora sojae.

Guo N, Ye WW, Wu XL, Shen DY, Wang YC, Xing H, Dou DL.

Genome. 2011 Nov;54(11):954-8. doi: 10.1139/g11-050. Epub 2011 Oct 13.


Parallel genome-wide expression profiling of host and pathogen during soybean cyst nematode infection of soybean.

Ithal N, Recknor J, Nettleton D, Hearne L, Maier T, Baum TJ, Mitchum MG.

Mol Plant Microbe Interact. 2007 Mar;20(3):293-305.


Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific.

Panthee DR, Marois JJ, Wright DL, Narváez D, Yuan JS, Stewart CN Jr.

Theor Appl Genet. 2009 Jan;118(2):359-70. doi: 10.1007/s00122-008-0905-1. Epub 2008 Oct 14.


Gene expression analysis in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) in an early growth stage.

Panthee DR, Yuan JS, Wright DL, Marois JJ, Mailhot D, Stewart CN Jr.

Funct Integr Genomics. 2007 Oct;7(4):291-301. Epub 2007 Feb 22.


Identification of candidate signaling genes including regulators of chromosome condensation 1 protein family differentially expressed in the soybean-Phytophthora sojae interaction.

Narayanan NN, Grosic S, Tasma IM, Grant D, Shoemaker R, Bhattacharyya MK.

Theor Appl Genet. 2009 Feb;118(3):399-412. doi: 10.1007/s00122-008-0895-z. Epub 2008 Sep 30.


Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response.

O'Rourke JA, Nelson RT, Grant D, Schmutz J, Grimwood J, Cannon S, Vance CP, Graham MA, Shoemaker RC.

BMC Genomics. 2009 Aug 13;10:376. doi: 10.1186/1471-2164-10-376.


Spatial and temporal expression patterns of Avr1b-1 and defense-related genes in soybean plants upon infection with Phytophthora sojae.

Valer K, Fliegmann J, Fröhlich A, Tyler BM, Ebel J.

FEMS Microbiol Lett. 2006 Dec;265(1):60-8. Epub 2006 Sep 29.


Distinct biphasic mRNA changes in response to Asian soybean rust infection.

van de Mortel M, Recknor JC, Graham MA, Nettleton D, Dittman JD, Nelson RT, Godoy CV, Abdelnoor RV, Almeida AM, Baum TJ, Whitham SA.

Mol Plant Microbe Interact. 2007 Aug;20(8):887-99.


A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection.

Klink VP, Overall CC, Alkharouf NW, MacDonald MH, Matthews BF.

Planta. 2007 Nov;226(6):1423-47. Epub 2007 Jul 25.


Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays.

Li L, He H, Zhang J, Wang X, Bai S, Stolc V, Tongprasit W, Young ND, Yu O, Deng XW.

Genome Biol. 2008;9(3):R57. doi: 10.1186/gb-2008-9-3-r57. Epub 2008 Mar 19.


Soybean defense responses to the soybean aphid.

Li Y, Zou J, Li M, Bilgin DD, Vodkin LO, Hartman GL, Clough SJ.

New Phytol. 2008;179(1):185-95. doi: 10.1111/j.1469-8137.2008.02443.x. Epub 2008 Apr 14.


Association of the transcriptional response of soybean plants with soybean mosaic virus systemic infection.

Babu M, Gagarinova AG, Brandle JE, Wang A.

J Gen Virol. 2008 Apr;89(Pt 4):1069-80. doi: 10.1099/vir.0.83531-0.


Recovering from iron deficiency chlorosis in near-isogenic soybeans: a microarray study.

O'Rourke JA, Graham MA, Vodkin L, Gonzalez DO, Cianzio SR, Shoemaker RC.

Plant Physiol Biochem. 2007 May;45(5):287-92. Epub 2007 Mar 14.


Different domains of Phytophthora sojae effector Avr4/6 are recognized by soybean resistance genes Rps4 and Rps6.

Dou D, Kale SD, Liu T, Tang Q, Wang X, Arredondo FD, Basnayake S, Whisson S, Drenth A, Maclean D, Tyler BM.

Mol Plant Microbe Interact. 2010 Apr;23(4):425-35. doi: 10.1094/MPMI-23-4-0425.


Identification of Phytophthora sojae genes upregulated during the early stage of soybean infection.

Chen X, Shen G, Wang Y, Zheng X, Wang Y.

FEMS Microbiol Lett. 2007 Apr;269(2):280-8. Epub 2007 Jan 30.

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