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Results: 1 to 20 of 56

Similar articles for PubMed (Select 19168912)

1.

Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.

Taher L, Ovcharenko I.

Bioinformatics. 2009 Mar 1;25(5):578-84. doi: 10.1093/bioinformatics/btp043. Epub 2009 Jan 25.

3.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

4.

Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data.

van den Berg BH, Thanthiriwatte C, Manda P, Bridges SM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S9. doi: 10.1186/1471-2105-10-S11-S9.

5.

GENCODE: producing a reference annotation for ENCODE.

Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R.

Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

6.

A procedure for assessing GO annotation consistency.

Dolan ME, Ni L, Camon E, Blake JA.

Bioinformatics. 2005 Jun;21 Suppl 1:i136-43.

7.

Coding DNA repeated throughout intergenic regions of the Arabidopsis thaliana genome: evolutionary footprints of RNA silencing.

Feng J, Naiman DQ, Cooper B.

Mol Biosyst. 2009 Dec;5(12):1679-87. doi: 10.1039/b903031j. Epub 2009 Apr 30.

PMID:
19452047
9.

GIFtS: annotation landscape analysis with GeneCards.

Harel A, Inger A, Stelzer G, Strichman-Almashanu L, Dalah I, Safran M, Lancet D.

BMC Bioinformatics. 2009 Oct 23;10:348. doi: 10.1186/1471-2105-10-348.

10.

Large-scale protein annotation through gene ontology.

Xie H, Wasserman A, Levine Z, Novik A, Grebinskiy V, Shoshan A, Mintz L.

Genome Res. 2002 May;12(5):785-94.

11.
12.

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE.

Genome Biol. 2002;3(12):RESEARCH0083. Epub 2002 Dec 31. Review.

13.

Highly conserved non-coding sequences are associated with vertebrate development.

Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJ, Cooke JE, Elgar G.

PLoS Biol. 2005 Jan;3(1):e7. Epub 2004 Nov 11.

14.

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.

15.

Predicting the in vivo signature of human gene regulatory sequences.

Noble WS, Kuehn S, Thurman R, Yu M, Stamatoyannopoulos J.

Bioinformatics. 2005 Jun;21 Suppl 1:i338-43.

16.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

17.

Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?

GuimarĂ£es AO, Motta FL, Alves VS, Castilho BA, Pesquero JB.

BMC Mol Biol. 2009 Feb 8;10:7. doi: 10.1186/1471-2199-10-7.

18.

Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology.

Botton A, Galla G, Conesa A, Bachem C, Ramina A, Barcaccia G.

BMC Genomics. 2008 Jul 24;9:347. doi: 10.1186/1471-2164-9-347.

19.

Intergenic, gene terminal, and intragenic CpG islands in the human genome.

Medvedeva YA, Fridman MV, Oparina NJ, Malko DB, Ermakova EO, Kulakovskiy IV, Heinzel A, Makeev VJ.

BMC Genomics. 2010 Jan 19;11:48. doi: 10.1186/1471-2164-11-48.

20.

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

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