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Results: 1 to 20 of 109

1.

Detection of sharing by descent, long-range phasing and haplotype imputation.

Kong A, Masson G, Frigge ML, Gylfason A, Zusmanovich P, Thorleifsson G, Olason PI, Ingason A, Steinberg S, Rafnar T, Sulem P, Mouy M, Jonsson F, Thorsteinsdottir U, Gudbjartsson DF, Stefansson H, Stefansson K.

Nat Genet. 2008 Sep;40(9):1068-75. doi: 10.1038/ng.216.

PMID:
19165921
[PubMed - indexed for MEDLINE]
2.

Identity-by-descent-based phasing and imputation in founder populations using graphical models.

Palin K, Campbell H, Wright AF, Wilson JF, Durbin R.

Genet Epidemiol. 2011 Dec;35(8):853-60. doi: 10.1002/gepi.20635. Epub 2011 Oct 17.

PMID:
22006673
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genotype phasing in populations of closely related individuals.

Hickey JM.

Methods Mol Biol. 2013;1019:381-94. doi: 10.1007/978-1-62703-447-0_16.

PMID:
23756900
[PubMed - indexed for MEDLINE]
4.

Improving the accuracy and efficiency of identity-by-descent detection in population data.

Browning BL, Browning SR.

Genetics. 2013 Jun;194(2):459-71. doi: 10.1534/genetics.113.150029. Epub 2013 Mar 27.

PMID:
23535385
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Distinct linkage disequilibrium (LD) runs of single nucleotide polymorphisms and microsatellite markers; implications for use of mixed marker haplotypes in LD-based mapping.

Lee KA, Sohn KM, Cho SH, Hwang H, Kim SW, Won HH, Kim HJ, Kim MJ, Cho SS, Park JH, Kim JW.

J Korean Med Sci. 2007 Jun;22(3):425-30.

PMID:
17596648
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Selection of genetic markers for association analyses, using linkage disequilibrium and haplotypes.

Meng Z, Zaykin DV, Xu CF, Wagner M, Ehm MG.

Am J Hum Genet. 2003 Jul;73(1):115-30. Epub 2003 Jun 5.

PMID:
12796855
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes.

Hickey JM, Kinghorn BP, Tier B, Wilson JF, Dunstan N, van der Werf JH.

Genet Sel Evol. 2011 Mar 10;43:12. doi: 10.1186/1297-9686-43-12.

PMID:
21388557
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identity by descent between distant relatives: detection and applications.

Browning SR, Browning BL.

Annu Rev Genet. 2012;46:617-33. doi: 10.1146/annurev-genet-110711-155534. Epub 2012 Sep 17. Review.

PMID:
22994355
[PubMed - indexed for MEDLINE]
9.

Haplotype block structure and its applications to association studies: power and study designs.

Zhang K, Calabrese P, Nordborg M, Sun F.

Am J Hum Genet. 2002 Dec;71(6):1386-94. Epub 2002 Nov 18.

PMID:
12439824
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.

Hao K, Chudin E, McElwee J, Schadt EE.

BMC Genet. 2009 Jun 16;10:27. doi: 10.1186/1471-2156-10-27.

PMID:
19531258
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation.

Hickey JM, Kinghorn BP, Tier B, van der Werf JH, Cleveland MA.

Genet Sel Evol. 2012 Jun 19;44:9. doi: 10.1186/1297-9686-44-9.

PMID:
22462519
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Efficient identification of identical-by-descent status in pedigrees with many untyped individuals.

Li X, Yin X, Li J.

Bioinformatics. 2010 Jun 15;26(12):i191-8. doi: 10.1093/bioinformatics/btq222.

PMID:
20529905
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data.

He D, Eskin E.

Gene. 2013 Apr 10;518(1):2-6. doi: 10.1016/j.gene.2012.11.093. Epub 2012 Dec 23.

PMID:
23269365
[PubMed - indexed for MEDLINE]
14.

Haplotype-based quantitative trait mapping using a clustering algorithm.

Li J, Zhou Y, Elston RC.

BMC Bioinformatics. 2006 May 18;7:258.

PMID:
16709248
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The use of family relationships and linkage disequilibrium to impute phase and missing genotypes in up to whole-genome sequence density genotypic data.

Meuwissen T, Goddard M.

Genetics. 2010 Aug;185(4):1441-9. doi: 10.1534/genetics.110.113936. Epub 2010 May 17.

PMID:
20479147
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Calculation of IBD probabilities with dense SNP or sequence data.

Keith JM, McRae A, Duffy D, Mengersen K, Visscher PM.

Genet Epidemiol. 2008 Sep;32(6):513-9. doi: 10.1002/gepi.20324.

PMID:
18357613
[PubMed - indexed for MEDLINE]
17.

Optimal haplotype structure for linkage disequilibrium-based fine mapping of quantitative trait loci using identity by descent.

Grapes L, Firat MZ, Dekkers JC, Rothschild MF, Fernando RL.

Genetics. 2006 Mar;172(3):1955-65. Epub 2005 Dec 1.

PMID:
16322505
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Detection, imputation, and association analysis of small deletions and null alleles on oligonucleotide arrays.

Franke L, de Kovel CG, Aulchenko YS, Trynka G, Zhernakova A, Hunt KA, Blauw HM, van den Berg LH, Ophoff R, Deloukas P, van Heel DA, Wijmenga C.

Am J Hum Genet. 2008 Jun;82(6):1316-33. doi: 10.1016/j.ajhg.2008.05.008.

PMID:
18519066
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations.

Huang W, He Y, Wang H, Wang Y, Liu Y, Wang Y, Chu X, Wang Y, Xu L, Shen Y, Xiong X, Li H, Wen B, Qian J, Yuan W, Zhang C, Wang Y, Jiang H, Zhao G, Chen Z, Jin L.

Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1418-21. Epub 2006 Jan 23.

PMID:
16432195
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Performance of random forest when SNPs are in linkage disequilibrium.

Meng YA, Yu Y, Cupples LA, Farrer LA, Lunetta KL.

BMC Bioinformatics. 2009 Mar 5;10:78. doi: 10.1186/1471-2105-10-78.

PMID:
19265542
[PubMed - indexed for MEDLINE]
Free PMC Article

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