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Results: 1 to 20 of 340

1.

Online tools for predicting integral membrane proteins.

Bigelow H, Rost B.

Methods Mol Biol. 2009;528:3-23. doi: 10.1007/978-1-60327-310-7_1.

PMID:
19153681
[PubMed - indexed for MEDLINE]
2.

waveTM: wavelet-based transmembrane segment prediction.

Pashou EE, Litou ZI, Liakopoulos TD, Hamodrakas SJ.

In Silico Biol. 2004;4(2):127-31.

PMID:
15107018
[PubMed - indexed for MEDLINE]
3.

Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions.

Lehnert U, Xia Y, Royce TE, Goh CS, Liu Y, Senes A, Yu H, Zhang ZL, Engelman DM, Gerstein M.

Q Rev Biophys. 2004 May;37(2):121-46. Review.

PMID:
15999419
[PubMed - indexed for MEDLINE]
4.

The use of functional domains to improve transmembrane protein topology prediction.

Xu EW, Kearney P, Brown DG.

J Bioinform Comput Biol. 2006 Feb;4(1):109-23.

PMID:
16568545
[PubMed - indexed for MEDLINE]
5.

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.

Bagos PG, Liakopoulos TD, Hamodrakas SJ.

BMC Bioinformatics. 2005 Jan 12;6:7.

PMID:
15647112
[PubMed - indexed for MEDLINE]
Free PMC Article
6.
7.

ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.

Granseth E, Viklund H, Elofsson A.

Bioinformatics. 2006 Jul 15;22(14):e191-6.

PMID:
16873471
[PubMed - indexed for MEDLINE]
Free Article
8.

MeDor: a metaserver for predicting protein disorder.

Lieutaud P, Canard B, Longhi S.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S25. doi: 10.1186/1471-2164-9-S2-S25.

PMID:
18831791
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.

Natt NK, Kaur H, Raghava GP.

Proteins. 2004 Jul 1;56(1):11-8.

PMID:
15162482
[PubMed - indexed for MEDLINE]
10.

MetaTM - a consensus method for transmembrane protein topology prediction.

Klammer M, Messina DN, Schmitt T, Sonnhammer EL.

BMC Bioinformatics. 2009 Sep 28;10:314. doi: 10.1186/1471-2105-10-314.

PMID:
19785723
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties.

Valavanis IK, Bagos PG, Emiris IZ.

Comput Biol Chem. 2006 Dec;30(6):416-24. Epub 2006 Nov 9.

PMID:
17097352
[PubMed - indexed for MEDLINE]
12.

Prediction of the burial status of transmembrane residues of helical membrane proteins.

Park Y, Hayat S, Helms V.

BMC Bioinformatics. 2007 Aug 20;8:302.

PMID:
17708758
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.

Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ.

BMC Bioinformatics. 2004 Mar 15;5:29.

PMID:
15070403
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

SVMtm: support vector machines to predict transmembrane segments.

Yuan Z, Mattick JS, Teasdale RD.

J Comput Chem. 2004 Apr 15;25(5):632-6.

PMID:
14978706
[PubMed - indexed for MEDLINE]
15.

TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins.

Randall A, Cheng J, Sweredoski M, Baldi P.

Bioinformatics. 2008 Feb 15;24(4):513-20. Epub 2007 Nov 15.

PMID:
18006547
[PubMed - indexed for MEDLINE]
Free Article
16.

Using pseudo amino acid composition to predict transmembrane regions in protein: cellular automata and Lempel-Ziv complexity.

Diao Y, Ma D, Wen Z, Yin J, Xiang J, Li M.

Amino Acids. 2008 Jan;34(1):111-7. Epub 2007 May 23.

PMID:
17520325
[PubMed - indexed for MEDLINE]
17.

State-of-the-art in membrane protein prediction.

Chen CP, Rost B.

Appl Bioinformatics. 2002;1(1):21-35. Review.

PMID:
15130854
[PubMed - indexed for MEDLINE]
18.

TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles.

Ou YY, Gromiha MM, Chen SA, Suwa M.

Comput Biol Chem. 2008 Jun;32(3):227-31. doi: 10.1016/j.compbiolchem.2008.03.002. Epub 2008 Mar 18.

PMID:
18434251
[PubMed - indexed for MEDLINE]
19.

Prediction of buried helices in multispan alpha helical membrane proteins.

Adamian L, Liang J.

Proteins. 2006 Apr 1;63(1):1-5.

PMID:
16419070
[PubMed - indexed for MEDLINE]
20.

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.

Bigelow H, Rost B.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W186-8.

PMID:
16844988
[PubMed - indexed for MEDLINE]
Free PMC Article

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