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Results: 1 to 20 of 157

1.

Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis.

Frech C, Kommenda M, Dorfer V, Kern T, Hintner H, Bauer JW, Onder K.

BMC Bioinformatics. 2009 Jan 19;10:21. doi: 10.1186/1471-2105-10-21.

PMID:
19152684
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Discovering reliable protein interactions from high-throughput experimental data using network topology.

Chen J, Hsu W, Lee ML, Ng SK.

Artif Intell Med. 2005 Sep-Oct;35(1-2):37-47.

PMID:
16055319
[PubMed - indexed for MEDLINE]
3.

POINeT: protein interactome with sub-network analysis and hub prioritization.

Lee SA, Chan CH, Chen TC, Yang CY, Huang KC, Tsai CH, Lai JM, Wang FS, Kao CY, Huang CY.

BMC Bioinformatics. 2009 Apr 21;10:114. doi: 10.1186/1471-2105-10-114.

PMID:
19379523
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

PPI finder: a mining tool for human protein-protein interactions.

He M, Wang Y, Li W.

PLoS One. 2009;4(2):e4554. doi: 10.1371/journal.pone.0004554. Epub 2009 Feb 23.

PMID:
19234603
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

An integrative domain-based approach to predicting protein-protein interactions.

Nguyen TP, Ho TB.

J Bioinform Comput Biol. 2008 Dec;6(6):1115-32.

PMID:
19090020
[PubMed - indexed for MEDLINE]
6.

Influence of protein abundance on high-throughput protein-protein interaction detection.

Ivanic J, Yu X, Wallqvist A, Reifman J.

PLoS One. 2009 Jun 5;4(6):e5815. doi: 10.1371/journal.pone.0005815.

PMID:
19503833
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Differential evolutionary rates of duplicated genes in protein interaction network.

Makino T, Suzuki Y, Gojobori T.

Gene. 2006 Dec 30;385:57-63. Epub 2006 Aug 17.

PMID:
16979849
[PubMed - indexed for MEDLINE]
8.

PPISearch: a web server for searching homologous protein-protein interactions across multiple species.

Chen CC, Lin CY, Lo YS, Yang JM.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W369-75. doi: 10.1093/nar/gkp309. Epub 2009 May 5.

PMID:
19417070
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Protein-protein interaction as a predictor of subcellular location.

Shin CJ, Wong S, Davis MJ, Ragan MA.

BMC Syst Biol. 2009 Feb 25;3:28. doi: 10.1186/1752-0509-3-28.

PMID:
19243629
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Computational methods for predicting protein-protein interactions.

Pitre S, Alamgir M, Green JR, Dumontier M, Dehne F, Golshani A.

Adv Biochem Eng Biotechnol. 2008;110:247-67. doi: 10.1007/10_2007_089. Review.

PMID:
18202838
[PubMed - indexed for MEDLINE]
11.

HAPPI: an online database of comprehensive human annotated and predicted protein interactions.

Chen JY, Mamidipalli S, Huan T.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S16. doi: 10.1186/1471-2164-10-S1-S16.

PMID:
19594875
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evaluation of different domain-based methods in protein interaction prediction.

Ta HX, Holm L.

Biochem Biophys Res Commun. 2009 Dec 18;390(3):357-62. doi: 10.1016/j.bbrc.2009.09.130. Epub 2009 Oct 2. Review.

PMID:
19800868
[PubMed - indexed for MEDLINE]
13.

Computational methods for the prediction of protein-protein interactions.

Xia JF, Wang SL, Lei YK.

Protein Pept Lett. 2010 Sep;17(9):1069-78.

PMID:
20509849
[PubMed - indexed for MEDLINE]
14.

Domain-oriented edge-based alignment of protein interaction networks.

Guo X, Hartemink AJ.

Bioinformatics. 2009 Jun 15;25(12):i240-6. doi: 10.1093/bioinformatics/btp202.

PMID:
19477994
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of differentially expressed subnetworks based on multivariate ANOVA.

Hwang T, Park T.

BMC Bioinformatics. 2009 Apr 30;10:128. doi: 10.1186/1471-2105-10-128.

PMID:
19405941
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Questioning the ubiquity of neofunctionalization.

Gibson TA, Goldberg DS.

PLoS Comput Biol. 2009 Jan;5(1):e1000252. doi: 10.1371/journal.pcbi.1000252. Epub 2009 Jan 2.

PMID:
19119408
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.

Zhou H, Wong L.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S20. doi: 10.1186/1471-2164-12-S3-S20. Epub 2011 Nov 30.

PMID:
22369691
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse.

Shin CJ, Davis MJ, Ragan MA.

Proteomics. 2009 Dec;9(23):5256-66. doi: 10.1002/pmic.200900262.

PMID:
19834899
[PubMed - indexed for MEDLINE]
19.

Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.

Zhou H, Gao S, Nguyen NN, Fan M, Jin J, Liu B, Zhao L, Xiong G, Tan M, Li S, Wong L.

Biol Direct. 2014 Apr 8;9:5. doi: 10.1186/1745-6150-9-5.

PMID:
24708540
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A domain-based approach to predict protein-protein interactions.

Singhal M, Resat H.

BMC Bioinformatics. 2007 Jun 13;8:199.

PMID:
17567909
[PubMed - indexed for MEDLINE]
Free PMC Article

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