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Similar articles for PubMed (Select 19116613)

1.

Literature-curated protein interaction datasets.

Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, Simonis N, Rual JF, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):39-46. doi: 10.1038/nmeth.1284.

2.

Evolution of protein interactions: from interactomes to interfaces.

Andreani J, Guerois R.

Arch Biochem Biophys. 2014 Jul 15;554:65-75. doi: 10.1016/j.abb.2014.05.010. Epub 2014 May 20. Review.

PMID:
24853495
3.

Engaging with molecular form to understand function.

Barber NC, Stark LA.

CBE Life Sci Educ. 2014 Spring;13(1):21-4. doi: 10.1187/cbe.13-12-0247. Review. No abstract available.

4.

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.

Orchard S, Ammari M, Aranda B, Breuza L, Briganti L, Broackes-Carter F, Campbell NH, Chavali G, Chen C, del-Toro N, Duesbury M, Dumousseau M, Galeota E, Hinz U, Iannuccelli M, Jagannathan S, Jimenez R, Khadake J, Lagreid A, Licata L, Lovering RC, Meldal B, Melidoni AN, Milagros M, Peluso D, Perfetto L, Porras P, Raghunath A, Ricard-Blum S, Roechert B, Stutz A, Tognolli M, van Roey K, Cesareni G, Hermjakob H.

Nucleic Acids Res. 2014 Jan;42(Database issue):D358-63. doi: 10.1093/nar/gkt1115. Epub 2013 Nov 13.

5.

Manually curated database of rice proteins.

Gour P, Garg P, Jain R, Joseph SV, Tyagi AK, Raghuvanshi S.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1214-21. doi: 10.1093/nar/gkt1072. Epub 2013 Nov 7.

6.

Protein-protein interaction networks studies and importance of 3D structure knowledge.

Lu HC, Fornili A, Fraternali F.

Expert Rev Proteomics. 2013 Dec;10(6):511-20. doi: 10.1586/14789450.2013.856764. Review.

PMID:
24206225
7.

Navigating the global protein-protein interaction landscape using iRefWeb.

Turinsky AL, Razick S, Turner B, Donaldson IM, Wodak SJ.

Methods Mol Biol. 2014;1091:315-31. doi: 10.1007/978-1-62703-691-7_22.

PMID:
24203342
8.

Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences.

Doğan T, Karaçalı B.

PLoS One. 2013 Sep 12;8(9):e75458. doi: 10.1371/journal.pone.0075458. eCollection 2013.

9.

Protein-protein interaction networks: the puzzling riches.

Wodak SJ, Vlasblom J, Turinsky AL, Pu S.

Curr Opin Struct Biol. 2013 Dec;23(6):941-53. doi: 10.1016/j.sbi.2013.08.002. Epub 2013 Sep 2. Review.

PMID:
24007795
10.

Uniform curation protocol of metazoan signaling pathways to predict novel signaling components.

Pálfy M, Farkas IJ, Vellai T, Korcsmáros T.

Methods Mol Biol. 2013;1021:285-97. doi: 10.1007/978-1-62703-450-0_15.

PMID:
23715991
11.

Interface-resolved network of protein-protein interactions.

Johnson ME, Hummer G.

PLoS Comput Biol. 2013;9(5):e1003065. doi: 10.1371/journal.pcbi.1003065. Epub 2013 May 16.

12.

Detection of protein catalytic sites in the biomedical literature.

Verspoor K, Mackinlay A, Cohn JD, Wall ME.

Pac Symp Biocomput. 2013:433-44.

13.

Understanding protein-protein interactions using local structural features.

Planas-Iglesias J, Bonet J, García-García J, Marín-López MA, Feliu E, Oliva B.

J Mol Biol. 2013 Apr 12;425(7):1210-24. doi: 10.1016/j.jmb.2013.01.014. Epub 2013 Jan 23.

PMID:
23353828
14.

Detection of protein complexes from affinity purification/mass spectrometry data.

Cai B, Wang H, Zheng H, Wang H.

BMC Syst Biol. 2012;6 Suppl 3:S4. doi: 10.1186/1752-0509-6-S3-S4. Epub 2012 Dec 17.

15.

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.

Kikugawa S, Nishikata K, Murakami K, Sato Y, Suzuki M, Altaf-Ul-Amin M, Kanaya S, Imanishi T.

BMC Syst Biol. 2012;6 Suppl 2:S7. doi: 10.1186/1752-0509-6-S2-S7. Epub 2012 Dec 12.

16.

On the functional and structural characterization of hubs in protein-protein interaction networks.

Bertolazzi P, Bock ME, Guerra C.

Biotechnol Adv. 2013 Mar-Apr;31(2):274-86. doi: 10.1016/j.biotechadv.2012.12.002. Epub 2012 Dec 8. Review.

PMID:
23228981
17.

HINT: High-quality protein interactomes and their applications in understanding human disease.

Das J, Yu H.

BMC Syst Biol. 2012 Jul 30;6:92. doi: 10.1186/1752-0509-6-92.

18.

Computational detection of protein complexes in AP-MS experiments.

Choi H.

Proteomics. 2012 May;12(10):1663-8. doi: 10.1002/pmic.201100508. Review.

PMID:
22711593
19.

Is newer better?--evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae.

James K, Wipat A, Hallinan J.

Integr Biol (Camb). 2012 Jul;4(7):715-27. doi: 10.1039/c2ib00123c. Epub 2012 Apr 23.

PMID:
22526920
20.

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.

Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, Hancock RE, Hannick LI, Jurisica I, Khadake J, Lynn DJ, Mahadevan U, Perfetto L, Raghunath A, Ricard-Blum S, Roechert B, Salwinski L, Stümpflen V, Tyers M, Uetz P, Xenarios I, Hermjakob H.

Nat Methods. 2012 Apr;9(4):345-50. doi: 10.1038/nmeth.1931. Erratum in: Nat Methods. 2012 Jun;9(6):626. Brinkman, Fiona [corrected to Brinkman, Fiona S L]; Hancock, Robert [corrected to Hancock, Robert E W].

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