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Items: 1 to 20 of 785

1.

SNP discovery in swine by reduced representation and high throughput pyrosequencing.

Wiedmann RT, Smith TP, Nonneman DJ.

BMC Genet. 2008 Dec 4;9:81. doi: 10.1186/1471-2156-9-81.

2.

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey.

Kerstens HH, Crooijmans RP, Veenendaal A, Dibbits BW, Chin-A-Woeng TF, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Oct 16;10:479. doi: 10.1186/1471-2164-10-479.

3.

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.

Van Tassell CP, Smith TP, Matukumalli LK, Taylor JF, Schnabel RD, Lawley CT, Haudenschild CD, Moore SS, Warren WC, Sonstegard TS.

Nat Methods. 2008 Mar;5(3):247-52. doi: 10.1038/nmeth.1185. Epub 2008 Feb 24.

PMID:
18297082
5.

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome.

Amaral AJ, Megens HJ, Kerstens HH, Heuven HC, Dibbits B, Crooijmans RP, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Aug 12;10:374. doi: 10.1186/1471-2164-10-374.

6.

Quality assessment parameters for EST-derived SNPs from catfish.

Wang S, Sha Z, Sonstegard TS, Liu H, Xu P, Somridhivej B, Peatman E, Kucuktas H, Liu Z.

BMC Genomics. 2008 Sep 30;9:450. doi: 10.1186/1471-2164-9-450.

7.

The development and characterization of a 60K SNP chip for chicken.

Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH.

BMC Genomics. 2011 May 31;12(1):274. doi: 10.1186/1471-2164-12-274.

8.

Discovery, characterization and validation of single nucleotide polymorphisms within 206 bovine genes that may be considered as candidate genes for beef production and quality.

Williams JL, Dunner S, Valentini A, Mazza R, Amarger V, Checa ML, Crisà A, Razzaq N, Delourme D, Grandjean F, Marchitelli C, García D, Gomez RP, Negrini R, Marsan PA, Levéziel H.

Anim Genet. 2009 Aug;40(4):486-91. doi: 10.1111/j.1365-2052.2009.01874.x. Epub 2009 Apr 16.

PMID:
19397516
9.
10.

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library.

Sánchez CC, Smith TP, Wiedmann RT, Vallejo RL, Salem M, Yao J, Rexroad CE 3rd.

BMC Genomics. 2009 Nov 25;10:559. doi: 10.1186/1471-2164-10-559.

11.

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.).

Trebbi D, Maccaferri M, de Heer P, Sørensen A, Giuliani S, Salvi S, Sanguineti MC, Massi A, van der Vossen EA, Tuberosa R.

Theor Appl Genet. 2011 Aug;123(4):555-69. doi: 10.1007/s00122-011-1607-7. Epub 2011 May 25.

PMID:
21611761
12.

Development and characterization of a high density SNP genotyping assay for cattle.

Matukumalli LK, Lawley CT, Schnabel RD, Taylor JF, Allan MF, Heaton MP, O'Connell J, Moore SS, Smith TP, Sonstegard TS, Van Tassell CP.

PLoS One. 2009;4(4):e5350. doi: 10.1371/journal.pone.0005350. Epub 2009 Apr 24.

13.

Linkage mapping of gene-associated SNPs to pig chromosome 11.

Sawera M, Cirera S, Jørgensen CB, Gorodkin J, Fredholm M.

Anim Genet. 2006 Jun;37(3):199-204.

PMID:
16734676
14.

SNP discovery by transcriptome pyrosequencing.

Barbazuk WB, Schnable PS.

Methods Mol Biol. 2011;729:225-46. doi: 10.1007/978-1-61779-065-2_15.

PMID:
21365494
15.

Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates.

Khatkar MS, Hobbs M, Neuditschko M, Sölkner J, Nicholas FW, Raadsma HW.

BMC Bioinformatics. 2010 Apr 7;11:171. doi: 10.1186/1471-2105-11-171.

16.

Discovery, validation and characterization of 1039 cattle single nucleotide polymorphisms.

Donthu R, Larkin DM, Heaton MP, Lewin HA.

Anim Genet. 2010 Aug;41(4):421-3. doi: 10.1111/j.1365-2052.2009.02008.x. Epub 2009 Nov 26.

PMID:
19958345
17.

Single nucleotide polymorphism (SNP) discovery in porcine expressed genes.

Fahrenkrug SC, Freking BA, Smith TP, Rohrer GA, Keele JW.

Anim Genet. 2002 Jun;33(3):186-95.

PMID:
12030921
18.

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae).

Renaut S, Nolte AW, Bernatchez L.

Mol Ecol. 2010 Mar;19 Suppl 1:115-31. doi: 10.1111/j.1365-294X.2009.04477.x.

PMID:
20331775
19.

Mining for single nucleotide polymorphisms in pig genome sequence data.

Kerstens HH, Kollers S, Kommadath A, Del Rosario M, Dibbits B, Kinders SM, Crooijmans RP, Groenen MA.

BMC Genomics. 2009 Jan 6;10:4. doi: 10.1186/1471-2164-10-4.

20.

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.

Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.

BMC Genomics. 2008 Jun 30;9:312. doi: 10.1186/1471-2164-9-312.

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