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Results: 1 to 20 of 200

1.

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.

Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Relman DA, Sogin ML.

PLoS Genet. 2008 Nov;4(11):e1000255. doi: 10.1371/journal.pgen.1000255. Epub 2008 Nov 21. Erratum in: PLoS Genet. 2008 Dec;4(12). doi: 10.1371/annotation/3d8a6578-ce56-45aa-bc71-05078355b851. Welch, David Mark [corrected to Mark Welch, David].

PMID:
19023400
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.

Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora MJ, Chistoserdov A, Orsi W, Edgcomb VP.

BMC Biol. 2009 Nov 3;7:72. doi: 10.1186/1741-7007-7-72.

PMID:
19886985
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes.

Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM.

PLoS One. 2009 Jul 27;4(7):e6372. doi: 10.1371/journal.pone.0006372. Erratum in: PLoS One. 2009;4(12). doi: 10.1371/annotation/50c43133-0df5-4b8b-8975-8cc37d4f2f26.

PMID:
19633714
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure.

Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB.

Environ Microbiol. 2009 May;11(5):1292-302. doi: 10.1111/j.1462-2920.2008.01857.x. Epub 2009 Feb 9.

PMID:
19220394
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.

Liu Z, DeSantis TZ, Andersen GL, Knight R.

Nucleic Acids Res. 2008 Oct;36(18):e120. doi: 10.1093/nar/gkn491. Epub 2008 Aug 22.

PMID:
18723574
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity.

Taib N, Mangot JF, Domaizon I, Bronner G, Debroas D.

PLoS One. 2013;8(3):e58950. doi: 10.1371/journal.pone.0058950. Epub 2013 Mar 14.

PMID:
23516585
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.

Dethlefsen L, Huse S, Sogin ML, Relman DA.

PLoS Biol. 2008 Nov 18;6(11):e280. doi: 10.1371/journal.pbio.0060280.

PMID:
19018661
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing.

Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC.

PLoS One. 2012;7(9):e44224. doi: 10.1371/journal.pone.0044224. Epub 2012 Sep 6.

PMID:
22970184
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments.

Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF.

PLoS One. 2013;8(2):e56018. doi: 10.1371/journal.pone.0056018. Epub 2013 Feb 6.

PMID:
23405248
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering.

Sul WJ, Cole JR, Jesus Eda C, Wang Q, Farris RJ, Fish JA, Tiedje JM.

Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14637-42. doi: 10.1073/pnas.1111435108. Epub 2011 Aug 22.

PMID:
21873204
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

JAGUC--a software package for environmental diversity analyses.

Nebel ME, Wild S, Holzhauser M, Hüttenberger L, Reitzig R, Sperber M, Stoeck T.

J Bioinform Comput Biol. 2011 Dec;9(6):749-73.

PMID:
22084012
[PubMed - indexed for MEDLINE]
12.

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.

Behnke A, Engel M, Christen R, Nebel M, Klein RR, Stoeck T.

Environ Microbiol. 2011 Feb;13(2):340-9. doi: 10.1111/j.1462-2920.2010.02332.x. Epub 2010 Sep 8.

PMID:
21281421
[PubMed - indexed for MEDLINE]
13.

Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition.

Kysela DT, Palacios C, Sogin ML.

Environ Microbiol. 2005 Mar;7(3):356-64.

PMID:
15683396
[PubMed - indexed for MEDLINE]
14.

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.

Wang Q, Garrity GM, Tiedje JM, Cole JR.

Appl Environ Microbiol. 2007 Aug;73(16):5261-7. Epub 2007 Jun 22.

PMID:
17586664
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions.

Maughan H, Wang PW, Diaz Caballero J, Fung P, Gong Y, Donaldson SL, Yuan L, Keshavjee S, Zhang Y, Yau YC, Waters VJ, Tullis DE, Hwang DM, Guttman DS.

PLoS One. 2012;7(10):e45791. doi: 10.1371/journal.pone.0045791. Epub 2012 Oct 2.

PMID:
23056217
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts.

Webster NS, Taylor MW, Behnam F, Lücker S, Rattei T, Whalan S, Horn M, Wagner M.

Environ Microbiol. 2010 Aug;12(8):2070-82. doi: 10.1111/j.1462-2920.2009.02065.x. Epub 2009 Sep 29.

PMID:
21966903
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The phylogenetic diversity of metagenomes.

Kembel SW, Eisen JA, Pollard KS, Green JL.

PLoS One. 2011;6(8):e23214. doi: 10.1371/journal.pone.0023214. Epub 2011 Aug 31.

PMID:
21912589
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

CREST--classification resources for environmental sequence tags.

Lanzén A, Jørgensen SL, Huson DH, Gorfer M, Grindhaug SH, Jonassen I, Øvreås L, Urich T.

PLoS One. 2012;7(11):e49334. doi: 10.1371/journal.pone.0049334. Epub 2012 Nov 8.

PMID:
23145153
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities.

Ashby MN, Rine J, Mongodin EF, Nelson KE, Dimster-Denk D.

Appl Environ Microbiol. 2007 Jul;73(14):4532-42. Epub 2007 May 25.

PMID:
17526780
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.

Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A.

J Biotechnol. 2012 Apr 30;158(4):248-58. doi: 10.1016/j.jbiotec.2012.01.020. Epub 2012 Feb 8.

PMID:
22342600
[PubMed - indexed for MEDLINE]

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