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Results: 1 to 20 of 269

1.

Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions.

Cai Z, Guisinger M, Kim HG, Ruck E, Blazier JC, McMurtry V, Kuehl JV, Boore J, Jansen RK.

J Mol Evol. 2008 Dec;67(6):696-704. doi: 10.1007/s00239-008-9180-7.

PMID:
19018585
[PubMed - indexed for MEDLINE]
2.

Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes.

Haberle RC, Fourcade HM, Boore JL, Jansen RK.

J Mol Evol. 2008 Apr;66(4):350-61. doi: 10.1007/s00239-008-9086-4. Epub 2008 Mar 11.

PMID:
18330485
[PubMed - indexed for MEDLINE]
3.

Dispersed repeats and structural reorganization in subclover chloroplast DNA.

Milligan BG, Hampton JN, Palmer JD.

Mol Biol Evol. 1989 Jul;6(4):355-68.

PMID:
2615639
[PubMed - indexed for MEDLINE]
4.

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage.

Guisinger MM, Kuehl JV, Boore JL, Jansen RK.

Mol Biol Evol. 2011 Jan;28(1):583-600. doi: 10.1093/molbev/msq229. Epub 2010 Aug 30. Erratum in: Mol Biol Evol. 2011 Apr;28(4):1543.

PMID:
20805190
[PubMed - indexed for MEDLINE]
Free Article
6.

The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants.

Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK.

Mol Biol Evol. 2006 Nov;23(11):2175-90. Epub 2006 Aug 17.

PMID:
16916942
[PubMed - indexed for MEDLINE]
Free Article
7.

Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes.

Saski C, Lee SB, Daniell H, Wood TC, Tomkins J, Kim HG, Jansen RK.

Plant Mol Biol. 2005 Sep;59(2):309-22.

PMID:
16247559
[PubMed - indexed for MEDLINE]
8.

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates.

Weng ML, Blazier JC, Govindu M, Jansen RK.

Mol Biol Evol. 2014 Mar;31(3):645-59. doi: 10.1093/molbev/mst257. Epub 2013 Dec 12.

PMID:
24336877
[PubMed - indexed for MEDLINE]
9.

Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions.

Lee HL, Jansen RK, Chumley TW, Kim KJ.

Mol Biol Evol. 2007 May;24(5):1161-80. Epub 2007 Feb 28.

PMID:
17329229
[PubMed - indexed for MEDLINE]
Free Article
10.

Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii.

Funk HT, Berg S, Krupinska K, Maier UG, Krause K.

BMC Plant Biol. 2007 Aug 22;7:45.

PMID:
17714582
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Implications of the plastid genome sequence of typha (typhaceae, poales) for understanding genome evolution in poaceae.

Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK.

J Mol Evol. 2010 Feb;70(2):149-66. doi: 10.1007/s00239-009-9317-3. Epub 2010 Jan 21.

PMID:
20091301
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.

Ruhlman T, Lee SB, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H.

BMC Genomics. 2006 Aug 31;7:222.

PMID:
16945140
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae).

Jansen RK, Wojciechowski MF, Sanniyasi E, Lee SB, Daniell H.

Mol Phylogenet Evol. 2008 Sep;48(3):1204-17. doi: 10.1016/j.ympev.2008.06.013. Epub 2008 Jun 27.

PMID:
18638561
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genomic organization of the canrep repetitive DNA in Brassica juncea.

Xia X, Rocha PS, Selvaraj G, Bertrand H.

Plant Mol Biol. 1994 Nov;26(3):817-32.

PMID:
7999997
[PubMed - indexed for MEDLINE]
15.

Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species.

Hirao T, Watanabe A, Kurita M, Kondo T, Takata K.

BMC Plant Biol. 2008 Jun 23;8:70. doi: 10.1186/1471-2229-8-70.

PMID:
18570682
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae).

Hansen DR, Dastidar SG, Cai Z, Penaflor C, Kuehl JV, Boore JL, Jansen RK.

Mol Phylogenet Evol. 2007 Nov;45(2):547-63. Epub 2007 Jun 16.

PMID:
17644003
[PubMed - indexed for MEDLINE]
17.

The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms.

Ma J, Yang B, Zhu W, Sun L, Tian J, Wang X.

Gene. 2013 Oct 10;528(2):120-31. doi: 10.1016/j.gene.2013.07.037. Epub 2013 Jul 27. Erratum in: Gene. 2014 Jan 1;533(1):458.

PMID:
23900198
[PubMed - indexed for MEDLINE]
18.

Genomic organization and evolution of the soybean SB92 satellite sequence.

Vahedian M, Shi L, Zhu T, Okimoto R, Danna K, Keim P.

Plant Mol Biol. 1995 Nov;29(4):857-62.

PMID:
8541510
[PubMed - indexed for MEDLINE]
19.

An unusual satellite DNA from Zamia paucijuga (Cycadales) characterised by two different organisations of the repetitive unit in the plant genome.

Cafasso D, Cozzolino S, De Luca P, Chinali G.

Gene. 2003 Jun 5;311:71-9.

PMID:
12853140
[PubMed - indexed for MEDLINE]
20.

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica.

Oki N, Yano K, Okumoto Y, Tsukiyama T, Teraishi M, Tanisaka T.

Genes Genet Syst. 2008 Aug;83(4):321-9.

PMID:
18931457
[PubMed - indexed for MEDLINE]
Free Article

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