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Results: 1 to 20 of 41

1.

Vectorized Radviz and its application to multiple cluster datasets.

Sharko J, Grinstein G, Marx KA.

IEEE Trans Vis Comput Graph. 2008 Nov-Dec;14(6):1444-51. doi: 10.1109/TVCG.2008.173.

PMID:
18988995
[PubMed]
2.

Value and relation display: interactive visual exploration of large data sets with hundreds of dimensions.

Yang J, Hubball D, Ward MO, Rundensteiner EA, Ribarsky W.

IEEE Trans Vis Comput Graph. 2007 May-Jun;13(3):494-507.

PMID:
17356216
[PubMed]
3.

Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation.

Aid-Pavlidis T, Pavlidis P, Timmusk T.

BMC Genomics. 2009 Sep 8;10:420. doi: 10.1186/1471-2164-10-420.

PMID:
19737418
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Class discovery from gene expression data based on perturbation and cluster ensemble.

Yu Z, Wong HS.

IEEE Trans Nanobioscience. 2009 Jun;8(2):147-60. doi: 10.1109/TNB.2009.2023321. Epub 2009 Jun 2.

PMID:
19497836
[PubMed - indexed for MEDLINE]
5.

Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis.

Yi M, Mudunuri U, Che A, Stephens RM.

BMC Bioinformatics. 2009 Jun 29;10:200. doi: 10.1186/1471-2105-10-200.

PMID:
19563622
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Biclustering of microarray data with MOSPO based on crowding distance.

Liu J, Li Z, Hu X, Chen Y.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S9. doi: 10.1186/1471-2105-10-S4-S9.

PMID:
19426457
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A semi-supervised approach to projected clustering with applications to microarray data.

Yip KY, Cheung L, Cheung DW, Jing L, Ng MK.

Int J Data Min Bioinform. 2009;3(3):229-59.

PMID:
19623769
[PubMed - indexed for MEDLINE]
8.

Bubble sets: revealing set relations with isocontours over existing visualizations.

Collins C, Penn G, Carpendale S.

IEEE Trans Vis Comput Graph. 2009 Nov-Dec;15(6):1009-16. doi: 10.1109/TVCG.2009.122.

PMID:
19834166
[PubMed]
9.

Surface extraction from multi-field particle volume data using multi-dimensional cluster visualization.

Linsen L, Van Long T, Rosenthal P, Rosswog S.

IEEE Trans Vis Comput Graph. 2008 Nov-Dec;14(6):1483-90. doi: 10.1109/TVCG.2008.167.

PMID:
18989000
[PubMed]
10.

Integrative disease classification based on cross-platform microarray data.

Liu CC, Hu J, Kalakrishnan M, Huang H, Zhou XJ.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S25. doi: 10.1186/1471-2105-10-S1-S25.

PMID:
19208125
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets.

Sharma A, Podolsky R, Zhao J, McIndoe RA.

Bioinformatics. 2009 May 1;25(9):1152-7. doi: 10.1093/bioinformatics/btp123. Epub 2009 Mar 4.

PMID:
19261720
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Extensions of parallel coordinates for interactive exploration of large multi-timepoint data sets.

Blaas J, Botha CP, Post FH.

IEEE Trans Vis Comput Graph. 2008 Nov-Dec;14(6):1436-43. doi: 10.1109/TVCG.2008.131.

PMID:
18988994
[PubMed]
13.

CLEAN: CLustering Enrichment ANalysis.

Freudenberg JM, Joshi VK, Hu Z, Medvedovic M.

BMC Bioinformatics. 2009 Jul 29;10:234. doi: 10.1186/1471-2105-10-234.

PMID:
19640299
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

GAGE: generally applicable gene set enrichment for pathway analysis.

Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ.

BMC Bioinformatics. 2009 May 27;10:161. doi: 10.1186/1471-2105-10-161.

PMID:
19473525
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Pattern discovery in expression profiling data.

Katagiri F, Glazebrook J.

Curr Protoc Mol Biol. 2009 Jan;Chapter 22:Unit 22.5. doi: 10.1002/0471142727.mb2205s85.

PMID:
19170028
[PubMed - indexed for MEDLINE]
16.

Integrated analysis of DNA copy number and gene expression microarray data using gene sets.

Menezes RX, Boetzer M, Sieswerda M, van Ommen GJ, Boer JM.

BMC Bioinformatics. 2009 Jun 29;10:203. doi: 10.1186/1471-2105-10-203.

PMID:
19563656
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

NIFTI: an evolutionary approach for finding number of clusters in microarray data.

Jonnalagadda S, Srinivasan R.

BMC Bioinformatics. 2009 Jan 30;10:40. doi: 10.1186/1471-2105-10-40.

PMID:
19178750
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Biclustering sparse binary genomic data.

van Uitert M, Meuleman W, Wessels L.

J Comput Biol. 2008 Dec;15(10):1329-45. doi: 10.1089/cmb.2008.0066.

PMID:
19040367
[PubMed - indexed for MEDLINE]
19.

Feature cluster selection for high-throughput data analysis.

Yu L.

Int J Data Min Bioinform. 2009;3(2):177-91.

PMID:
19517988
[PubMed - indexed for MEDLINE]
20.

Microarray gene cluster identification and annotation through cluster ensemble and EM-based informative textual summarization.

Hu X, Park EK, Zhang X.

IEEE Trans Inf Technol Biomed. 2009 Sep;13(5):832-40. doi: 10.1109/TITB.2009.2023984. Epub 2009 Jun 12.

PMID:
19527962
[PubMed - indexed for MEDLINE]

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