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Items: 1 to 20 of 135


Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.

Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, Hancock RE, Brinkman FS.

Nucleic Acids Res. 2009 Jan;37(Database issue):D483-8. doi: 10.1093/nar/gkn861. Epub 2008 Oct 31.


Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.

Winsor GL, Lo R, Ho Sui SJ, Ung KS, Huang S, Cheng D, Ching WK, Hancock RE, Brinkman FS.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D338-43.


Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes.

Winsor GL, Lam DK, Fleming L, Lo R, Whiteside MD, Yu NY, Hancock RE, Brinkman FS.

Nucleic Acids Res. 2011 Jan;39(Database issue):D596-600. doi: 10.1093/nar/gkq869. Epub 2010 Oct 6.


The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.

Winsor GL, Khaira B, Van Rossum T, Lo R, Whiteside MD, Brinkman FS.

Bioinformatics. 2008 Dec 1;24(23):2803-4. doi: 10.1093/bioinformatics/btn524. Epub 2008 Oct 7.


Mining the Pseudomonas genome.

Winsor GL, Brinkman FS.

Methods Mol Biol. 2014;1149:417-32. doi: 10.1007/978-1-4939-0473-0_33.


SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas.

Choi C, Münch R, Leupold S, Klein J, Siegel I, Thielen B, Benkert B, Kucklick M, Schobert M, Barthelmes J, Ebeling C, Haddad I, Scheer M, Grote A, Hiller K, Bunk B, Schreiber K, Retter I, Schomburg D, Jahn D.

Nucleic Acids Res. 2007 Jan;35(Database issue):D533-7.


The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.

McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, Osterman A, Paarmann D, Paczian T, Parrello B, Pusch GD, Rodionov DA, Shi X, Vassieva O, Vonstein V, Zagnitko O, Xia F, Zinner J, Overbeek R, Stevens R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D347-53. Epub 2006 Dec 1.


Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.

Stover CK, Pham XQ, Erwin AL, Mizoguchi SD, Warrener P, Hickey MJ, Brinkman FS, Hufnagle WO, Kowalik DJ, Lagrou M, Garber RL, Goltry L, Tolentino E, Westbrock-Wadman S, Yuan Y, Brody LL, Coulter SN, Folger KR, Kas A, Larbig K, Lim R, Smith K, Spencer D, Wong GK, Wu Z, Paulsen IT, Reizer J, Saier MH, Hancock RE, Lory S, Olson MV.

Nature. 2000 Aug 31;406(6799):959-64.


PseudoCyc, a pathway-genome database for Pseudomonas aeruginosa.

Romero P, Karp P.

J Mol Microbiol Biotechnol. 2003;5(4):230-9.


ARDB--Antibiotic Resistance Genes Database.

Liu B, Pop M.

Nucleic Acids Res. 2009 Jan;37(Database issue):D443-7. doi: 10.1093/nar/gkn656. Epub 2008 Oct 2.


MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.

Chiapello H, Gendrault A, Caron C, Blum J, Petit MA, El Karoui M.

BMC Bioinformatics. 2008 Nov 27;9:498. doi: 10.1186/1471-2105-9-498.


Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

Oberhardt MA, Puchałka J, Fryer KE, Martins dos Santos VA, Papin JA.

J Bacteriol. 2008 Apr;190(8):2790-803. doi: 10.1128/JB.01583-07. Epub 2008 Jan 11.


Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database.

Winsor GL, Griffiths EJ, Lo R, Dhillon BK, Shay JA, Brinkman FS.

Nucleic Acids Res. 2016 Jan 4;44(D1):D646-53. doi: 10.1093/nar/gkv1227. Epub 2015 Nov 17.


GenoList: an integrated environment for comparative analysis of microbial genomes.

Lechat P, Hummel L, Rousseau S, Moszer I.

Nucleic Acids Res. 2008 Jan;36(Database issue):D469-74. Epub 2007 Nov 21.


A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.


DroSpeGe: rapid access database for new Drosophila species genomes.

Gilbert DG.

Nucleic Acids Res. 2007 Jan;35(Database issue):D480-5.


Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR).

Klein J, Münch R, Biegler I, Haddad I, Retter I, Jahn D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D494-8. doi: 10.1093/nar/gkn674. Epub 2008 Oct 14.


MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.

Uchiyama I.

Nucleic Acids Res. 2007 Jan;35(Database issue):D343-6. Epub 2006 Nov 29.


BacMap: an interactive picture atlas of annotated bacterial genomes.

Stothard P, Van Domselaar G, Shrivastava S, Guo A, O'Neill B, Cruz J, Ellison M, Wishart DS.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D317-20.

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