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Similar articles for PubMed (Select 18951969)

1.

A multi-layer method to study genome-scale positions of nucleosomes.

Di Gesù V, Lo Bosco G, Pinello L, Yuan GC, Corona DF.

Genomics. 2009 Feb;93(2):140-5. doi: 10.1016/j.ygeno.2008.09.012. Epub 2008 Nov 21.

2.

A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome.

Wei S, Falk SJ, Black BE, Lee TH.

Nucleic Acids Res. 2015 May 26. pii: gkv549. [Epub ahead of print]

3.

Genome-wide nucleosome detection based on the dinucleotide position frequencies.

Huang X, Wang J, Yan H.

Int J Data Min Bioinform. 2014;10(3):285-99.

PMID:
25946864
4.

Comparative analysis of methods for genome-wide nucleosome cartography.

Quintales L, Vázquez E, Antequera F.

Brief Bioinform. 2014 Oct 8. pii: bbu037. [Epub ahead of print]

PMID:
25296770
5.

Genome-Wide Analysis of Nucleosome Positions, Occupancy, and Accessibility in Yeast: Nucleosome Mapping, High-Resolution Histone ChIP, and NCAM.

Rodriguez J, McKnight JN, Tsukiyama T.

Curr Protoc Mol Biol. 2014 Oct 1;108:21.28.1-21.28.16. doi: 10.1002/0471142727.mb2128s108.

PMID:
25271716
6.

PuFFIN--a parameter-free method to build nucleosome maps from paired-end reads.

Polishko A, Bunnik EM, Le Roch KG, Lonardi S.

BMC Bioinformatics. 2014;15 Suppl 9:S11. doi: 10.1186/1471-2105-15-S9-S11. Epub 2014 Sep 10.

7.

Reading sequence-directed computational nucleosome maps.

Nibhani R, Trifonov EN.

J Biomol Struct Dyn. 2015;33(7):1558-66. doi: 10.1080/07391102.2014.958877. Epub 2014 Sep 26.

PMID:
25187186
8.

Changes in nucleosome occupancy occur in a chromosome specific manner.

Sexton BS, Druliner BR, Avey D, Zhu F, Dennis JH.

Genom Data. 2014 Dec 1;2:114-116.

PMID:
25152865
9.

Novel Gene Discovery in the Human Malaria Parasite using Nucleosome Positioning Data.

Pokhriyal N, Ponts N, Harris EY, Le Roch KG, Lonardi S.

Comput Syst Bioinformatics Conf. 2010 Aug;9:124-135.

10.

Computational discovery of feature patterns in nucleosomal DNA sequences.

Zheng Y, Li X, Hu H.

Genomics. 2014 Aug;104(2):87-95. doi: 10.1016/j.ygeno.2014.07.002. Epub 2014 Jul 23.

PMID:
25063528
11.

An integrative approach to understanding the combinatorial histone code at functional elements.

Lai WK, Buck MJ.

Bioinformatics. 2013 Sep 15;29(18):2231-7. doi: 10.1093/bioinformatics/btt382. Epub 2013 Jul 2.

12.

NucleoFinder: a statistical approach for the detection of nucleosome positions.

Becker J, Yau C, Hancock JM, Holmes CC.

Bioinformatics. 2013 Mar 15;29(6):711-6. doi: 10.1093/bioinformatics/bts719. Epub 2013 Jan 6.

13.

DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing.

Chen K, Xi Y, Pan X, Li Z, Kaestner K, Tyler J, Dent S, He X, Li W.

Genome Res. 2013 Feb;23(2):341-51. doi: 10.1101/gr.142067.112. Epub 2012 Nov 28.

14.

Salt fractionation of nucleosomes for genome-wide profiling.

Teves SS, Henikoff S.

Methods Mol Biol. 2012;833:421-32. doi: 10.1007/978-1-61779-477-3_25.

PMID:
22183608
15.

Genomic approaches for determining nucleosome occupancy in yeast.

Tsui K, Durbic T, Gebbia M, Nislow C.

Methods Mol Biol. 2012;833:389-411. doi: 10.1007/978-1-61779-477-3_23.

PMID:
22183606
17.

Nucleosome positioning based on the sequence word composition.

Yi XF, He ZS, Chou KC, Kong XY.

Protein Pept Lett. 2012 Jan;19(1):79-90.

PMID:
21919856
18.

Genome-wide approaches to studying yeast chromatin modifications.

Schones DE, Cui K, Cuddapah S.

Methods Mol Biol. 2011;759:61-71. doi: 10.1007/978-1-61779-173-4_4.

PMID:
21863481
19.

Statistical Mechanics of Nucleosomes Constrained by Higher-Order Chromatin Structure.

Chereji RV, Morozov AV.

J Stat Phys. 2011 Jul 1;144(2):379-404.

20.

Prediction of nucleosome occupancy in Saccharomyces cerevisiae using position-correlation scoring function.

Xing Y, Zhao X, Cai L.

Genomics. 2011 Nov;98(5):359-66. doi: 10.1016/j.ygeno.2011.07.008. Epub 2011 Aug 2.

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