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Items: 1 to 20 of 187

1.

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing.

Wheat CW.

Genetica. 2010 Apr;138(4):433-51. doi: 10.1007/s10709-008-9326-y. Epub 2008 Oct 18.

PMID:
18931921
2.

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH.

Mol Ecol. 2008 Apr;17(7):1636-47. doi: 10.1111/j.1365-294X.2008.03666.x. Epub 2008 Feb 5.

PMID:
18266620
3.

Applications of next generation sequencing in molecular ecology of non-model organisms.

Ekblom R, Galindo J.

Heredity (Edinb). 2011 Jul;107(1):1-15. doi: 10.1038/hdy.2010.152. Epub 2010 Dec 8. Review.

4.

Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.

Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A.

Mol Biol Evol. 2009 Dec;26(12):2731-44. doi: 10.1093/molbev/msp188. Epub 2009 Aug 25.

5.

Genome-enabled development of DNA markers for ecology, evolution and conservation.

Thomson RC, Wang IJ, Johnson JR.

Mol Ecol. 2010 Jun;19(11):2184-95. doi: 10.1111/j.1365-294X.2010.04650.x. Epub 2010 May 10. Review.

PMID:
20465588
6.

Sequencing goes 454 and takes large-scale genomics into the wild.

Ellegren H.

Mol Ecol. 2008 Apr;17(7):1629-31. doi: 10.1111/j.1365-294X.2008.03699.x. Epub 2008 Feb 13.

PMID:
18284566
7.

Genomic resources for flatfish research and their applications.

Cerdà J, Douglas S, Reith M.

J Fish Biol. 2010 Oct;77(5):1045-70. doi: 10.1111/j.1095-8649.2010.02695.x. Review.

PMID:
21039490
8.

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

Horner DS, Pavesi G, Castrignanò T, De Meo PD, Liuni S, Sammeth M, Picardi E, Pesole G.

Brief Bioinform. 2010 Mar;11(2):181-97. doi: 10.1093/bib/bbp046. Epub 2009 Oct 27. Review.

9.

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species.

Bellin D, Ferrarini A, Chimento A, Kaiser O, Levenkova N, Bouffard P, Delledonne M.

BMC Genomics. 2009 Nov 24;10:555. doi: 10.1186/1471-2164-10-555.

10.
11.

Systems-wide chicken DNA microarrays, gene expression profiling, and discovery of functional genes.

Cogburn LA, Wang X, Carre W, Rejto L, Porter TE, Aggrey SE, Simon J.

Poult Sci. 2003 Jun;82(6):939-51.

PMID:
12817449
12.

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity.

Aubin-Horth N, Renn SC.

Mol Ecol. 2009 Sep;18(18):3763-80. doi: 10.1111/j.1365-294X.2009.04313.x. Epub 2009 Sep 1. Review.

PMID:
19732339
13.

Tag-based approaches for transcriptome research and genome annotation.

Harbers M, Carninci P.

Nat Methods. 2005 Jul;2(7):495-502. Review.

PMID:
15973418
14.

Applications of next-generation sequencing technologies in functional genomics.

Morozova O, Marra MA.

Genomics. 2008 Nov;92(5):255-64. doi: 10.1016/j.ygeno.2008.07.001. Epub 2008 Aug 24. Review.

15.

Plant database resources at The Institute for Genomic Research.

Chan AP, Rabinowicz PD, Quackenbush J, Buell CR, Town CD.

Methods Mol Biol. 2007;406:113-36.

PMID:
18287690
16.

Genome-wide SNP detection in the great tit Parus major using high throughput sequencing.

van Bers NE, van Oers K, Kerstens HH, Dibbits BW, Crooijmans RP, Visser ME, Groenen MA.

Mol Ecol. 2010 Mar;19 Suppl 1:89-99. doi: 10.1111/j.1365-294X.2009.04486.x.

PMID:
20331773
17.

Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius.

Marinković M, de Leeuw WC, de Jong M, Kraak MH, Admiraal W, Breit TM, Jonker MJ.

PLoS One. 2012;7(10):e48096. doi: 10.1371/journal.pone.0048096. Epub 2012 Oct 25.

18.

Genomic resources in horticultural crops: status, utility and challenges.

Sonah H, Deshmukh RK, Singh VP, Gupta DK, Singh NK, Sharma TR.

Biotechnol Adv. 2011 Mar-Apr;29(2):199-209. doi: 10.1016/j.biotechadv.2010.11.002. Epub 2010 Nov 19. Review.

PMID:
21094247
19.

Perspectives of DNA microarray and next-generation DNA sequencing technologies.

Teng X, Xiao H.

Sci China C Life Sci. 2009 Jan;52(1):7-16. doi: 10.1007/s11427-009-0012-9. Epub 2009 Jan 19. Review.

PMID:
19152079
20.

The next generation of microarray research: applications in evolutionary and ecological genomics.

Shiu SH, Borevitz JO.

Heredity (Edinb). 2008 Feb;100(2):141-9. Epub 2006 Nov 8. Review.

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