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Results: 1 to 20 of 313

1.

Chemostat-based micro-array analysis in baker's yeast.

Daran-Lapujade P, Daran JM, van Maris AJ, de Winde JH, Pronk JT.

Adv Microb Physiol. 2009;54:257-311. doi: 10.1016/S0065-2911(08)00004-0. Review.

PMID:
18929070
[PubMed - indexed for MEDLINE]
2.

Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae.

Hayes A, Zhang N, Wu J, Butler PR, Hauser NC, Hoheisel JD, Lim FL, Sharrocks AD, Oliver SG.

Methods. 2002 Mar;26(3):281-90.

PMID:
12054884
[PubMed - indexed for MEDLINE]
3.

Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity.

Jansen ML, Diderich JA, Mashego M, Hassane A, de Winde JH, Daran-Lapujade P, Pronk JT.

Microbiology. 2005 May;151(Pt 5):1657-69.

PMID:
15870473
[PubMed - indexed for MEDLINE]
Free Article
4.

Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures.

Boer VM, Daran JM, Almering MJ, de Winde JH, Pronk JT.

FEMS Yeast Res. 2005 Jul;5(10):885-97.

PMID:
15949974
[PubMed - indexed for MEDLINE]
5.

Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae.

Piper MD, Daran-Lapujade P, Bro C, Regenberg B, Knudsen S, Nielsen J, Pronk JT.

J Biol Chem. 2002 Oct 4;277(40):37001-8. Epub 2002 Jul 16.

PMID:
12121991
[PubMed - indexed for MEDLINE]
Free Article
6.

Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data.

Knijnenburg TA, Daran JM, van den Broek MA, Daran-Lapujade PA, de Winde JH, Pronk JT, Reinders MJ, Wessels LF.

BMC Genomics. 2009 Jan 27;10:53. doi: 10.1186/1471-2164-10-53.

PMID:
19173729
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Combinatorial influence of environmental parameters on transcription factor activity.

Knijnenburg TA, Wessels LF, Reinders MJ.

Bioinformatics. 2008 Jul 1;24(13):i172-81. doi: 10.1093/bioinformatics/btn155.

PMID:
18586711
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Exploiting combinatorial cultivation conditions to infer transcriptional regulation.

Knijnenburg TA, de Winde JH, Daran JM, Daran-Lapujade P, Pronk JT, Reinders MJ, Wessels LF.

BMC Genomics. 2007 Jan 22;8:25.

PMID:
17241460
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

Daran-Lapujade P, Jansen ML, Daran JM, van Gulik W, de Winde JH, Pronk JT.

J Biol Chem. 2004 Mar 5;279(10):9125-38. Epub 2003 Nov 20.

PMID:
14630934
[PubMed - indexed for MEDLINE]
Free Article
10.

Integration of gene expression data into genome-scale metabolic models.

Akesson M, Förster J, Nielsen J.

Metab Eng. 2004 Oct;6(4):285-93.

PMID:
15491858
[PubMed - indexed for MEDLINE]
11.

Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae.

Tai SL, Boer VM, Daran-Lapujade P, Walsh MC, de Winde JH, Daran JM, Pronk JT.

J Biol Chem. 2005 Jan 7;280(1):437-47. Epub 2004 Oct 20.

PMID:
15496405
[PubMed - indexed for MEDLINE]
Free Article
12.

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.

de Groot MJ, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EA, Reinders MJ, Pronk JT, Heck AJ, Slijper M.

Microbiology. 2007 Nov;153(Pt 11):3864-78.

PMID:
17975095
[PubMed - indexed for MEDLINE]
Free Article
13.

Identification of genes whose expressions are enhanced or reduced in baker's yeast during fed-batch culture process using molasses medium by DNA microarray analysis.

Shima J, Kuwazaki S, Tanaka F, Watanabe H, Yamamoto H, Nakajima R, Tokashiki T, Tamura H.

Int J Food Microbiol. 2005 Jun 25;102(1):63-71.

PMID:
15925003
[PubMed - indexed for MEDLINE]
14.

Genome-wide transcriptional analysis in S. cerevisiae by mini-array membrane hybridization.

Cox KH, Pinchak AB, Cooper TG.

Yeast. 1999 Jun 15;15(8):703-13.

PMID:
10392447
[PubMed - indexed for MEDLINE]
15.

Chemostat cultivation as a tool for studies on sugar transport in yeasts.

Weusthuis RA, Pronk JT, van den Broek PJ, van Dijken JP.

Microbiol Rev. 1994 Dec;58(4):616-30. Review.

PMID:
7854249
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures.

Boender LG, van Maris AJ, de Hulster EA, Almering MJ, van der Klei IJ, Veenhuis M, de Winde JH, Pronk JT, Daran-Lapujade P.

FEMS Yeast Res. 2011 Dec;11(8):603-20. doi: 10.1111/j.1567-1364.2011.00750.x. Epub 2011 Sep 26.

PMID:
22093745
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Accurate, precise modeling of cell proliferation kinetics from time-lapse imaging and automated image analysis of agar yeast culture arrays.

Shah NA, Laws RJ, Wardman B, Zhao LP, Hartman JL 4th.

BMC Syst Biol. 2007 Jan 8;1:3.

PMID:
17408510
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.

Boer VM, de Winde JH, Pronk JT, Piper MD.

J Biol Chem. 2003 Jan 31;278(5):3265-74. Epub 2002 Oct 31.

PMID:
12414795
[PubMed - indexed for MEDLINE]
Free Article
19.

Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations.

Aguilera J, Petit T, de Winde JH, Pronk JT.

FEMS Yeast Res. 2005 Apr;5(6-7):579-93.

PMID:
15780657
[PubMed - indexed for MEDLINE]
20.

Correlation between transcript profiles and fitness of deletion mutants in anaerobic chemostat cultures of Saccharomyces cerevisiae.

Tai SL, Snoek I, Luttik MA, Almering MJ, Walsh MC, Pronk JT, Daran JM.

Microbiology. 2007 Mar;153(Pt 3):877-86.

PMID:
17322208
[PubMed - indexed for MEDLINE]
Free PMC Article

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