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Results: 1 to 20 of 546

1.

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.

PMID:
18925948
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data.

Hawkins T, Chitale M, Luban S, Kihara D.

Proteins. 2009 Feb 15;74(3):566-82. doi: 10.1002/prot.22172.

PMID:
18655063
[PubMed - indexed for MEDLINE]
3.

Detection of new protein domains using co-occurrence: application to Plasmodium falciparum.

Terrapon N, Gascuel O, Maréchal E, Bréehélin L.

Bioinformatics. 2009 Dec 1;25(23):3077-83. doi: 10.1093/bioinformatics/btp560. Epub 2009 Sep 28.

PMID:
19786484
[PubMed - indexed for MEDLINE]
Free Article
4.

AVID: an integrative framework for discovering functional relationships among proteins.

Jiang T, Keating AE.

BMC Bioinformatics. 2005 Jun 1;6:136.

PMID:
15929793
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum.

Bréhélin L, Florent I, Gascuel O, Maréchal E.

BMC Genomics. 2010 Jan 15;11:35. doi: 10.1186/1471-2164-11-35.

PMID:
20078859
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism.

Florent I, Porcel BM, Guillaume E, Da Silva C, Artiguenave F, Maréchal E, Bréhélin L, Gascuel O, Charneau S, Wincker P, Grellier P.

BMC Genomics. 2009 May 19;10:235. doi: 10.1186/1471-2164-10-235.

PMID:
19454033
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. doi: 10.1186/1471-2180-9-S1-S8. Review.

PMID:
19278556
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

DynGO: a tool for visualizing and mining of Gene Ontology and its associations.

Liu H, Hu ZZ, Wu CH.

BMC Bioinformatics. 2005 Aug 9;6:201.

PMID:
16091147
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

How to decide which are the most pertinent overly-represented features during gene set enrichment analysis.

Barriot R, Sherman DJ, Dutour I.

BMC Bioinformatics. 2007 Sep 11;8:332.

PMID:
17848190
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene Ontology term overlap as a measure of gene functional similarity.

Mistry M, Pavlidis P.

BMC Bioinformatics. 2008 Aug 4;9:327. doi: 10.1186/1471-2105-9-327.

PMID:
18680592
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology.

Botton A, Galla G, Conesa A, Bachem C, Ramina A, Barcaccia G.

BMC Genomics. 2008 Jul 24;9:347. doi: 10.1186/1471-2164-9-347.

PMID:
18652646
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum.

Tedder PM, Bradford JR, Needham CJ, McConkey GA, Bulpitt AJ, Westhead DR.

Bioinformatics. 2010 Oct 1;26(19):2431-7. doi: 10.1093/bioinformatics/btq450. Epub 2010 Aug 6.

PMID:
20693320
[PubMed - indexed for MEDLINE]
Free Article
13.

In silico discovery of transcription regulatory elements in Plasmodium falciparum.

Young JA, Johnson JR, Benner C, Yan SF, Chen K, Le Roch KG, Zhou Y, Winzeler EA.

BMC Genomics. 2008 Feb 7;9:70. doi: 10.1186/1471-2164-9-70.

PMID:
18257930
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).

Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM.

Nucleic Acids Res. 2002 Jan 1;30(1):69-72.

PMID:
11752257
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A new method to measure the semantic similarity of GO terms.

Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF.

Bioinformatics. 2007 May 15;23(10):1274-81. Epub 2007 Mar 7.

PMID:
17344234
[PubMed - indexed for MEDLINE]
Free Article
16.

Gene expression trends and protein features effectively complement each other in gene function prediction.

Wabnik K, Hvidsten TR, Kedzierska A, Van Leene J, De Jaeger G, Beemster GT, Komorowski J, Kuiper MT.

Bioinformatics. 2009 Feb 1;25(3):322-30. doi: 10.1093/bioinformatics/btn625. Epub 2008 Dec 2.

PMID:
19050035
[PubMed - indexed for MEDLINE]
Free Article
17.

A procedure for assessing GO annotation consistency.

Dolan ME, Ni L, Camon E, Blake JA.

Bioinformatics. 2005 Jun;21 Suppl 1:i136-43.

PMID:
15961450
[PubMed - indexed for MEDLINE]
Free Article
18.

Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species.

Watanabe J, Suzuki Y, Sasaki M, Sugano S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D334-8.

PMID:
14681428
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species.

Carlton JM, Muller R, Yowell CA, Fluegge MR, Sturrock KA, Pritt JR, Vargas-Serrato E, Galinski MR, Barnwell JW, Mulder N, Kanapin A, Cawley SE, Hide WA, Dame JB.

Mol Biochem Parasitol. 2001 Dec;118(2):201-10.

PMID:
11738710
[PubMed - indexed for MEDLINE]
20.

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