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Results: 1 to 20 of 97

1.

PMAP: databases for analyzing proteolytic events and pathways.

Igarashi Y, Heureux E, Doctor KS, Talwar P, Gramatikova S, Gramatikoff K, Zhang Y, Blinov M, Ibragimova SS, Boyd S, Ratnikov B, Cieplak P, Godzik A, Smith JW, Osterman AL, Eroshkin AM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D611-8. doi: 10.1093/nar/gkn683. Epub 2008 Oct 8.

PMID:
18842634
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

CutDB: a proteolytic event database.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW, Osterman AL, Godzik A.

Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.

PMID:
17142225
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function.

Lange PF, Huesgen PF, Overall CM.

Nucleic Acids Res. 2012 Jan;40(Database issue):D351-61. doi: 10.1093/nar/gkr1025. Epub 2011 Nov 18.

PMID:
22102574
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Mass spectrometry-based proteomics strategies for protease cleavage site identification.

van den Berg BH, Tholey A.

Proteomics. 2012 Feb;12(4-5):516-29. doi: 10.1002/pmic.201100379. Epub 2012 Jan 19. Review.

PMID:
22246699
[PubMed - indexed for MEDLINE]
5.

Profiling protease activities by dynamic proteomics workflows.

Klingler D, Hardt M.

Proteomics. 2012 Feb;12(4-5):587-96. doi: 10.1002/pmic.201100399. Epub 2012 Jan 23. Review.

PMID:
22246865
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence.

Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

J Mol Biol. 2002 Apr 5;317(4):541-57.

PMID:
11955008
[PubMed - indexed for MEDLINE]
7.

Protease proteomics: revealing protease in vivo functions using systems biology approaches.

Doucet A, Overall CM.

Mol Aspects Med. 2008 Oct;29(5):339-58. doi: 10.1016/j.mam.2008.04.003. Epub 2008 May 1. Review.

PMID:
18571712
[PubMed - indexed for MEDLINE]
8.

Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates.

Kleifeld O, Doucet A, Prudova A, auf dem Keller U, Gioia M, Kizhakkedathu JN, Overall CM.

Nat Protoc. 2011 Sep 22;6(10):1578-611. doi: 10.1038/nprot.2011.382.

PMID:
21959240
[PubMed - indexed for MEDLINE]
9.

Bioinformatic approaches for predicting substrates of proteases.

Song J, Tan H, Boyd SE, Shen H, Mahmood K, Webb GI, Akutsu T, Whisstock JC, Pike RN.

J Bioinform Comput Biol. 2011 Feb;9(1):149-78. Review.

PMID:
21328711
[PubMed - indexed for MEDLINE]
10.

SitePredicting the cleavage of proteinase substrates.

Verspurten J, Gevaert K, Declercq W, Vandenabeele P.

Trends Biochem Sci. 2009 Jul;34(7):319-23. doi: 10.1016/j.tibs.2009.04.001. Epub 2009 Jun 21.

PMID:
19546006
[PubMed - indexed for MEDLINE]
11.

MEROPS: the peptidase database.

Rawlings ND, Morton FR, Kok CY, Kong J, Barrett AJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D320-5. Epub 2007 Nov 8.

PMID:
17991683
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Substrate-driven mapping of the degradome by comparison of sequence logos.

Fuchs JE, von Grafenstein S, Huber RG, Kramer C, Liedl KR.

PLoS Comput Biol. 2013;9(11):e1003353. doi: 10.1371/journal.pcbi.1003353. Epub 2013 Nov 14.

PMID:
24244149
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
14.

Protein TAILS: when termini tell tales of proteolysis and function.

Lange PF, Overall CM.

Curr Opin Chem Biol. 2013 Feb;17(1):73-82. doi: 10.1016/j.cbpa.2012.11.025. Epub 2013 Jan 6. Review.

PMID:
23298954
[PubMed - indexed for MEDLINE]
Free Article
15.

Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry.

Gupta N, Hixson KK, Culley DE, Smith RD, Pevzner PA.

Proteomics. 2010 Aug;10(15):2833-44. doi: 10.1002/pmic.200900821.

PMID:
20597098
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events.

Colaert N, Maddelein D, Impens F, Van Damme P, Plasman K, Helsens K, Hulstaert N, Vandekerckhove J, Gevaert K, Martens L.

Nucleic Acids Res. 2013 Jan;41(Database issue):D333-7. doi: 10.1093/nar/gks998. Epub 2012 Oct 23.

PMID:
23093603
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A sequence and structure based method to predict putative substrates, functions and regulatory networks of endo proteases.

Venkatraman P, Balakrishnan S, Rao S, Hooda Y, Pol S.

PLoS One. 2009 May 27;4(5):e5700. doi: 10.1371/journal.pone.0005700.

PMID:
19492082
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ProLysED: an integrated database and meta-server of bacterial protease systems.

Firdaus Raih M, Ahmad HA, Sharum MY, Azizi N, Mohamed R.

Appl Bioinformatics. 2005;4(2):147-50.

PMID:
16128617
[PubMed - indexed for MEDLINE]
19.

Substrate specifity profiling of the Aspergillus fumigatus proteolytic secretome reveals consensus motifs with predominance of Ile/Leu and Phe/Tyr.

Watson DS, Feng X, Askew DS, Jambunathan K, Kodukula K, Galande AK.

PLoS One. 2011;6(6):e21001. doi: 10.1371/journal.pone.0021001. Epub 2011 Jun 17.

PMID:
21695046
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

[The effect of protein oxidation modification on protease-antiprotease balance and intracellular proteolysis].

Skrzydlewska E, Farbiszewski R, Gacko M.

Postepy Hig Med Dosw. 1997;51(4):443-56. Polish.

PMID:
9446105
[PubMed - indexed for MEDLINE]

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