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Results: 1 to 20 of 85

1.

Genomes and knowledge - a questionable relationship?

Whitworth DE.

Trends Microbiol. 2008 Nov;16(11):512-9. doi: 10.1016/j.tim.2008.08.001. Epub 2008 Sep 24.

PMID:
18819801
[PubMed - indexed for MEDLINE]
2.

Annotation, comparison and databases for hundreds of bacterial genomes.

Médigue C, Moszer I.

Res Microbiol. 2007 Dec;158(10):724-36. Epub 2007 Oct 6. Review.

PMID:
18031997
[PubMed - indexed for MEDLINE]
3.

Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence.

Vinatzer BA, Yan S.

Mol Plant Pathol. 2008 Jan;9(1):105-18. doi: 10.1111/j.1364-3703.2007.00438.x. Review.

PMID:
18705888
[PubMed - indexed for MEDLINE]
4.

How do we compare hundreds of bacterial genomes?

Field D, Wilson G, van der Gast C.

Curr Opin Microbiol. 2006 Oct;9(5):499-504. Epub 2006 Aug 30. Review.

PMID:
16942900
[PubMed - indexed for MEDLINE]
5.

Comparative genomics: digging for data.

Avison MB.

Methods Mol Biol. 2004;266:47-69.

PMID:
15148415
[PubMed - indexed for MEDLINE]
6.

VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics.

Yang J, Chen L, Sun L, Yu J, Jin Q.

Nucleic Acids Res. 2008 Jan;36(Database issue):D539-42. Epub 2007 Nov 4.

PMID:
17984080
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Fitting the niche by genomic adaptation.

Thomson N, Bentley S, Holden M, Parkhill J.

Nat Rev Microbiol. 2003 Nov;1(2):92-3.

PMID:
15035037
[PubMed - indexed for MEDLINE]
8.

Comparative genomics: the bacterial pan-genome.

Tettelin H, Riley D, Cattuto C, Medini D.

Curr Opin Microbiol. 2008 Oct;11(5):472-7. Review.

PMID:
19086349
[PubMed - indexed for MEDLINE]
9.

The microbial pan-genome.

Medini D, Donati C, Tettelin H, Masignani V, Rappuoli R.

Curr Opin Genet Dev. 2005 Dec;15(6):589-94. Epub 2005 Sep 26. Review.

PMID:
16185861
[PubMed - indexed for MEDLINE]
10.

e-Science: relieving bottlenecks in large-scale genome analyses.

Craddock T, Harwood CR, Hallinan J, Wipat A.

Nat Rev Microbiol. 2008 Dec;6(12):948-54. doi: 10.1038/nrmicro2031. Review.

PMID:
19008893
[PubMed - indexed for MEDLINE]
11.

Microbiology in the post-genomic era.

Medini D, Serruto D, Parkhill J, Relman DA, Donati C, Moxon R, Falkow S, Rappuoli R.

Nat Rev Microbiol. 2008 Jun;6(6):419-30. doi: 10.1038/nrmicro1901. Epub 2008 May 13. Review.

PMID:
18475305
[PubMed - indexed for MEDLINE]
12.

Bacterial comparative genomics.

Prentice MB.

Genome Biol. 2004;5(8):338. Epub 2004 Jul 28. No abstract available.

PMID:
15287971
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

PMID:
18840280
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.

Woebken D, Teeling H, Wecker P, Dumitriu A, Kostadinov I, Delong EF, Amann R, Glöckner FO.

ISME J. 2007 Sep;1(5):419-35. Epub 2007 Aug 9.

PMID:
18043661
[PubMed - indexed for MEDLINE]
16.

Phylogenetic understanding of clonal populations in an era of whole genome sequencing.

Pearson T, Okinaka RT, Foster JT, Keim P.

Infect Genet Evol. 2009 Sep;9(5):1010-9. doi: 10.1016/j.meegid.2009.05.014. Epub 2009 May 27. Review.

PMID:
19477301
[PubMed - indexed for MEDLINE]
17.

Bacterial pathogenomics.

Pallen MJ, Wren BW.

Nature. 2007 Oct 18;449(7164):835-42. Review.

PMID:
17943120
[PubMed - indexed for MEDLINE]
18.

Genomes back-to-back: when sequencing race is a good thing.

Galperin MY.

Environ Microbiol. 2004 Dec;6(12):1205-9. No abstract available.

PMID:
15560818
[PubMed - indexed for MEDLINE]
19.

Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach.

Mora M, Donati C, Medini D, Covacci A, Rappuoli R.

Curr Opin Microbiol. 2006 Oct;9(5):532-6. Epub 2006 Aug 4. Review.

PMID:
16890009
[PubMed - indexed for MEDLINE]
20.

BugView: a tool for genome visualization and comparison.

Leader DP.

Methods Mol Biol. 2007;395:109-32.

PMID:
17993670
[PubMed - indexed for MEDLINE]

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