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Results: 1 to 20 of 91

1.

The convergence of carbohydrate active gene repertoires in human gut microbes.

Lozupone CA, Hamady M, Cantarel BL, Coutinho PM, Henrissat B, Gordon JI, Knight R.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):15076-81. doi: 10.1073/pnas.0807339105. Epub 2008 Sep 19.

PMID:
18806222
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote.

Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber AP.

Science. 2013 Mar 8;339(6124):1207-10. doi: 10.1126/science.1231707.

PMID:
23471408
[PubMed - indexed for MEDLINE]
Free Article
3.

Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment.

Ricard G, McEwan NR, Dutilh BE, Jouany JP, Macheboeuf D, Mitsumori M, McIntosh FM, Michalowski T, Nagamine T, Nelson N, Newbold CJ, Nsabimana E, Takenaka A, Thomas NA, Ushida K, Hackstein JH, Huynen MA.

BMC Genomics. 2006 Feb 10;7:22.

PMID:
16472398
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Phylogenetic diversity of gene sequences isolated from the rumen as analysed using a self-organizing map (SOM).

Mitsumori M, Nakagawa S, Matsui H, Shinkai T, Takenaka A.

J Appl Microbiol. 2010 Sep;109(3):763-70. doi: 10.1111/j.1365-2672.2010.04703.x.

PMID:
20233261
[PubMed - indexed for MEDLINE]
5.

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota.

Hehemann JH, Correc G, Barbeyron T, Helbert W, Czjzek M, Michel G.

Nature. 2010 Apr 8;464(7290):908-12. doi: 10.1038/nature08937.

PMID:
20376150
[PubMed - indexed for MEDLINE]
6.

Genome phylogeny based on gene content.

Snel B, Bork P, Huynen MA.

Nat Genet. 1999 Jan;21(1):108-10.

PMID:
9916801
[PubMed - indexed for MEDLINE]
7.

Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria.

Ugalde JA, Podell S, Narasingarao P, Allen EE.

Biol Direct. 2011 Oct 10;6:52. doi: 10.1186/1745-6150-6-52.

PMID:
21985229
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Nitrogenase gene diversity and microbial community structure: a cross-system comparison.

Zehr JP, Jenkins BD, Short SM, Steward GF.

Environ Microbiol. 2003 Jul;5(7):539-54. Review.

PMID:
12823187
[PubMed - indexed for MEDLINE]
9.

Molecular musings in microbial ecology and evolution.

Case RJ, Boucher Y.

Biol Direct. 2011 Nov 10;6:58. doi: 10.1186/1745-6150-6-58. Review.

PMID:
22074255
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

PMID:
11734060
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomes in flux: the evolution of archaeal and proteobacterial gene content.

Snel B, Bork P, Huynen MA.

Genome Res. 2002 Jan;12(1):17-25.

PMID:
11779827
[PubMed - indexed for MEDLINE]
Free Article
12.

Genetics. Paradigm for life.

McInerney JO, Pisani D.

Science. 2007 Nov 30;318(5855):1390-1. No abstract available.

PMID:
18048672
[PubMed - indexed for MEDLINE]
13.

Phylogenetic diversity and axial distribution of microbes in the intestinal tract of the polychaete Neanthes glandicincta.

Li M, Yang H, Gu JD.

Microb Ecol. 2009 Nov;58(4):892-902. doi: 10.1007/s00248-009-9550-8. Epub 2009 Jul 2.

PMID:
19572164
[PubMed - indexed for MEDLINE]
14.

Genome-wide experimental determination of barriers to horizontal gene transfer.

Sorek R, Zhu Y, Creevey CJ, Francino MP, Bork P, Rubin EM.

Science. 2007 Nov 30;318(5855):1449-52. Epub 2007 Oct 18.

PMID:
17947550
[PubMed - indexed for MEDLINE]
Free Article
15.

Bacterial and archaeal phylogenetic diversity of a cold sulfur-rich spring on the shoreline of Lake Erie, Michigan.

Chaudhary A, Haack SK, Duris JW, Marsh TL.

Appl Environ Microbiol. 2009 Aug;75(15):5025-36. doi: 10.1128/AEM.00112-09. Epub 2009 Jun 19.

PMID:
19542341
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.

Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV.

Genome Biol. 2003;4(9):R55. Epub 2003 Aug 29.

PMID:
12952534
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Prokaryotic genomes: the emerging paradigm of genome-based microbiology.

Koonin EV, Galperin MY.

Curr Opin Genet Dev. 1997 Dec;7(6):757-63. Review.

PMID:
9468784
[PubMed - indexed for MEDLINE]
18.

Gene decay in archaea.

van Passel MW, Smillie CS, Ochman H.

Archaea. 2007 May;2(2):137-43.

PMID:
17350934
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea.

Swan BK, Ehrhardt CJ, Reifel KM, Moreno LI, Valentine DL.

Appl Environ Microbiol. 2010 Feb;76(3):757-68. doi: 10.1128/AEM.02409-09. Epub 2009 Nov 30.

PMID:
19948847
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

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