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Similar articles for PubMed (Select 18781832)

1.

Inferring ancestral gene orders for a family of tandemly arrayed genes.

Bertrand D, Lajoie M, El-Mabrouk N.

J Comput Biol. 2008 Oct;15(8):1063-77. doi: 10.1089/cmb.2008.0025.

PMID:
18781832
2.

ProCARs: Progressive Reconstruction of Ancestral Gene Orders.

Perrin A, Varré JS, Blanquart S, Ouangraoua A.

BMC Genomics. 2015 May 26;16 Suppl 5:S6. doi: 10.1186/1471-2164-16-S5-S6. Epub 2015 May 26.

3.

Assessing Differences Between Ancestral Recombination Graphs.

Kuhner MK, Yamato J.

J Mol Evol. 2015 Jun;80(5-6):258-64. doi: 10.1007/s00239-015-9676-x. Epub 2015 Apr 5.

PMID:
25841763
4.

MLGO: phylogeny reconstruction and ancestral inference from gene-order data.

Hu F, Lin Y, Tang J.

BMC Bioinformatics. 2014 Nov 8;15:354. doi: 10.1186/s12859-014-0354-6.

5.

Tempo and mode of gene duplication in mammalian ribosomal protein evolution.

Dharia AP, Obla A, Gajdosik MD, Simon A, Nelson CE.

PLoS One. 2014 Nov 4;9(11):e111721. doi: 10.1371/journal.pone.0111721. eCollection 2014.

6.

Reconstruction of ancestral gene orders using probabilistic and gene encoding approaches.

Yang N, Hu F, Zhou L, Tang J.

PLoS One. 2014 Oct 10;9(10):e108796. doi: 10.1371/journal.pone.0108796. eCollection 2014.

7.

Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals.

Niimura Y, Matsui A, Touhara K.

Genome Res. 2014 Sep;24(9):1485-96. doi: 10.1101/gr.169532.113. Epub 2014 Jul 22.

8.

Are the duplication cost and Robinson-Foulds distance equivalent?

Zheng Y, Zhang L.

J Comput Biol. 2014 Aug;21(8):578-90. doi: 10.1089/cmb.2014.0021. Epub 2014 Jul 2.

PMID:
24988427
9.

Inferring gene family histories in yeast identifies lineage specific expansions.

Ames RM, Money D, Lovell SC.

PLoS One. 2014 Jun 12;9(6):e99480. doi: 10.1371/journal.pone.0099480. eCollection 2014.

10.

Reconciliation of gene and species trees.

Rusin LY, Lyubetskaya EV, Gorbunov KY, Lyubetsky VA.

Biomed Res Int. 2014;2014:642089. doi: 10.1155/2014/642089. Epub 2014 Mar 27.

11.

Frequent expansions of the bitter taste receptor gene repertoire during evolution of mammals in the Euarchontoglires clade.

Hayakawa T, Suzuki-Hashido N, Matsui A, Go Y.

Mol Biol Evol. 2014 Aug;31(8):2018-31. doi: 10.1093/molbev/msu144. Epub 2014 Apr 23.

PMID:
24758778
12.

Genome-wide probabilistic reconciliation analysis across vertebrates.

Mahmudi O, Sjöstrand J, Sennblad B, Lagergren J.

BMC Bioinformatics. 2013;14 Suppl 15:S10. doi: 10.1186/1471-2105-14-S15-S10. Epub 2013 Oct 15.

13.

Lateral gene transfer, rearrangement, reconciliation.

Patterson M, Szöllősi G, Daubin V, Tannier E.

BMC Bioinformatics. 2013;14 Suppl 15:S4. doi: 10.1186/1471-2105-14-S15-S4. Epub 2013 Oct 15.

14.

Algorithms for genome-scale phylogenetics using gene tree parsimony.

Bansal MS, Eulenstein O.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):939-56. doi: 10.1109/TCBB.2013.103.

PMID:
24334388
15.

Age distribution patterns of human gene families: divergent for Gene Ontology categories and concordant between different subcellular localizations.

Liu G, Zou Y, Cheng Q, Zeng Y, Gu X, Su Z.

Mol Genet Genomics. 2014 Apr;289(2):137-47. doi: 10.1007/s00438-013-0799-8. Epub 2013 Dec 10.

PMID:
24322347
16.

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees.

Wu YC, Rasmussen MD, Bansal MS, Kellis M.

Genome Res. 2014 Mar;24(3):475-86. doi: 10.1101/gr.161968.113. Epub 2013 Dec 5.

17.

A pluralistic account of homology: adapting the models to the data.

Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO.

Mol Biol Evol. 2014 Mar;31(3):501-16. doi: 10.1093/molbev/mst228. Epub 2013 Nov 22. Review.

18.

Reconciliation-based detection of co-evolving gene families.

Chan YB, Ranwez V, Scornavacca C.

BMC Bioinformatics. 2013 Nov 20;14:332. doi: 10.1186/1471-2105-14-332.

19.

Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods.

Nguyen TH, Ranwez V, Berry V, Scornavacca C.

PLoS One. 2013 Oct 4;8(10):e73667. doi: 10.1371/journal.pone.0073667. eCollection 2013.

20.

DrML: probabilistic modeling of gene duplications.

Górecki P, Eulenstein O.

J Comput Biol. 2014 Jan;21(1):89-98. doi: 10.1089/cmb.2013.0078. Epub 2013 Sep 27.

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