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The long and short of inverted repeat genes in animals: microRNAs, mirtrons and hairpin RNAs.

Okamura K, Chung WJ, Lai EC.

Cell Cycle. 2008 Sep 15;7(18):2840-5. Epub 2008 Sep 5. Review.


The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs.

Okamura K, Chung WJ, Ruby JG, Guo H, Bartel DP, Lai EC.

Nature. 2008 Jun 5;453(7196):803-6. doi: 10.1038/nature07015. Epub 2008 May 7.


Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates.

Wen J, Ladewig E, Shenker S, Mohammed J, Lai EC.

PLoS Comput Biol. 2015 Sep 1;11(9):e1004441. doi: 10.1371/journal.pcbi.1004441. eCollection 2015 Sep.


Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues.

Castellano L, Stebbing J.

Nucleic Acids Res. 2013 Mar 1;41(5):3339-51. doi: 10.1093/nar/gks1474. Epub 2013 Jan 15.


The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila.

Okamura K, Hagen JW, Duan H, Tyler DM, Lai EC.

Cell. 2007 Jul 13;130(1):89-100. Epub 2007 Jun 28.


Mirtrons: microRNA biogenesis via splicing.

Westholm JO, Lai EC.

Biochimie. 2011 Nov;93(11):1897-904. doi: 10.1016/j.biochi.2011.06.017. Epub 2011 Jun 21. Review.


Intronic microRNA precursors that bypass Drosha processing.

Ruby JG, Jan CH, Bartel DP.

Nature. 2007 Jul 5;448(7149):83-6. Epub 2007 Jun 24.


Vectors and methods for hairpin RNA and artificial microRNA-mediated gene silencing in plants.

Eamens AL, Waterhouse PM.

Methods Mol Biol. 2011;701:179-97. doi: 10.1007/978-1-61737-957-4_10.


Derivation and function of small interfering RNAs and microRNAs.

Cullen BR.

Virus Res. 2004 Jun 1;102(1):3-9. Review.


Biogenesis of mammalian microRNAs by a non-canonical processing pathway.

Havens MA, Reich AA, Duelli DM, Hastings ML.

Nucleic Acids Res. 2012 May;40(10):4626-40. doi: 10.1093/nar/gks026. Epub 2012 Jan 23.


The contributions of dsRNA structure to Dicer specificity and efficiency.

Vermeulen A, Behlen L, Reynolds A, Wolfson A, Marshall WS, Karpilow J, Khvorova A.

RNA. 2005 May;11(5):674-82. Epub 2005 Apr 5.


Mammalian mirtron genes.

Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC.

Mol Cell. 2007 Oct 26;28(2):328-36.


Sorting of Drosophila small silencing RNAs.

Tomari Y, Du T, Zamore PD.

Cell. 2007 Jul 27;130(2):299-308.


Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC.

Genome Res. 2011 Feb;21(2):286-300. doi: 10.1101/gr.113050.110. Epub 2010 Dec 22.


Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs.

Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R.

Genes Dev. 2008 Oct 15;22(20):2773-85. doi: 10.1101/gad.1705308.


A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral MicroRNAs.

Bogerd HP, Karnowski HW, Cai X, Shin J, Pohlers M, Cullen BR.

Mol Cell. 2010 Jan 15;37(1):135-42. doi: 10.1016/j.molcel.2009.12.016.


Intronic regions of plant genes potentially encode RDR (RNA-dependent RNA polymerase)-dependent small RNAs.

Qin J, Ma X, Yi Z, Tang Z, Meng Y.

J Exp Bot. 2015 Apr;66(7):1763-8. doi: 10.1093/jxb/eru542. Epub 2015 Jan 21.


Small regulatory RNAs in mammals.

Mattick JS, Makunin IV.

Hum Mol Genet. 2005 Apr 15;14 Spec No 1:R121-32. Review.


MicroRNAs and other tiny endogenous RNAs in C. elegans.

Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D.

Curr Biol. 2003 May 13;13(10):807-18.


Noncanonical microRNAs and endogenous siRNAs in normal and psoriatic human skin.

Xia J, Joyce CE, Bowcock AM, Zhang W.

Hum Mol Genet. 2013 Feb 15;22(4):737-48. doi: 10.1093/hmg/dds481. Epub 2012 Nov 21.

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