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Items: 1 to 20 of 198

1.

Network-based prediction of human tissue-specific metabolism.

Shlomi T, Cabili MN, Herrgård MJ, Palsson BØ, Ruppin E.

Nat Biotechnol. 2008 Sep;26(9):1003-10. doi: 10.1038/nbt.1487.

PMID:
18711341
2.

The Edinburgh human metabolic network reconstruction and its functional analysis.

Ma H, Sorokin A, Mazein A, Selkov A, Selkov E, Demin O, Goryanin I.

Mol Syst Biol. 2007;3:135. Epub 2007 Sep 18.

3.

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production.

Colijn C, Brandes A, Zucker J, Lun DS, Weiner B, Farhat MR, Cheng TY, Moody DB, Murray M, Galagan JE.

PLoS Comput Biol. 2009 Aug;5(8):e1000489. doi: 10.1371/journal.pcbi.1000489. Epub 2009 Aug 28.

4.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

5.

The reconstruction and analysis of tissue specific human metabolic networks.

Hao T, Ma HW, Zhao XM, Goryanin I.

Mol Biosyst. 2012 Feb;8(2):663-70. doi: 10.1039/c1mb05369h. Epub 2011 Dec 19.

PMID:
22183149
6.

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas.

Mani KM, Lefebvre C, Wang K, Lim WK, Basso K, Dalla-Favera R, Califano A.

Mol Syst Biol. 2008;4:169. doi: 10.1038/msb.2008.2. Epub 2008 Feb 12.

7.

A genome-scale, constraint-based approach to systems biology of human metabolism.

Mo ML, Jamshidi N, Palsson BØ.

Mol Biosyst. 2007 Sep;3(9):598-603. Epub 2007 Jul 11.

PMID:
17700859
8.

Computational identification of altered metabolism using gene expression and metabolic pathways.

Nam H, Lee J, Lee D.

Biotechnol Bioeng. 2009 Jul 1;103(4):835-43. doi: 10.1002/bit.22320.

PMID:
19378263
9.

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.

Becker SA, Feist AM, Mo ML, Hannum G, Palsson BØ, Herrgard MJ.

Nat Protoc. 2007;2(3):727-38.

PMID:
17406635
10.

Reconstruction and analysis of human liver-specific metabolic network based on CNHLPP data.

Zhao J, Geng C, Tao L, Zhang D, Jiang Y, Tang K, Zhu R, Yu H, Zhang W, He F, Li Y, Cao Z.

J Proteome Res. 2010 Apr 5;9(4):1648-58. doi: 10.1021/pr9006188.

PMID:
20136149
11.

AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis.

de Oliveira Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK.

Plant Physiol. 2010 Feb;152(2):579-89. doi: 10.1104/pp.109.148817. Epub 2009 Dec 31.

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Identification and target prediction of miRNAs specifically expressed in rat neural tissue.

Hua YJ, Tang ZY, Tu K, Zhu L, Li YX, Xie L, Xiao HS.

BMC Genomics. 2009 May 9;10:214. doi: 10.1186/1471-2164-10-214.

16.

Ranking genes by their co-expression to subsets of pathway members.

Adler P, Peterson H, Agius P, Reimand J, Vilo J.

Ann N Y Acad Sci. 2009 Mar;1158:1-13. doi: 10.1111/j.1749-6632.2008.03747.x.

PMID:
19348627
17.

Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1777-82. Epub 2007 Jan 31.

18.

Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism.

Nemenman I, Escola GS, Hlavacek WS, Unkefer PJ, Unkefer CJ, Wall ME.

Ann N Y Acad Sci. 2007 Dec;1115:102-15. Epub 2007 Oct 9.

PMID:
17925356
19.

Genome-scale modeling and in silico analysis of mouse cell metabolic network.

Selvarasu S, Karimi IA, Ghim GH, Lee DY.

Mol Biosyst. 2010 Jan;6(1):152-61. doi: 10.1039/b912865d. Epub 2009 Sep 2.

PMID:
20024077
20.

GO based tissue specific functions of mouse using countable gene expression profiles.

Takenaka Y, Matsumoto A, Matsuda H.

Genome Inform. 2007;19:154-65.

PMID:
18546513
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