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Results: 1 to 20 of 289

1.

Multivariate segmentation in the analysis of transcription tiling array data.

Piccolboni A.

J Comput Biol. 2008 Sep;15(7):845-56. doi: 10.1089/cmb.2007.0141.

PMID:
18707537
[PubMed - indexed for MEDLINE]
2.

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M.

Bioinformatics. 2006 Dec 15;22(24):3016-24. Epub 2006 Oct 12.

PMID:
17038339
[PubMed - indexed for MEDLINE]
Free Article
3.

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB.

Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.

PMID:
17387113
[PubMed - indexed for MEDLINE]
Free Article
4.

An efficient pseudomedian filter for tiling microrrays.

Royce TE, Carriero NJ, Gerstein MB.

BMC Bioinformatics. 2007 Jun 7;8:186.

PMID:
17555595
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.

Rach EA, Yuan HY, Majoros WH, Tomancak P, Ohler U.

Genome Biol. 2009;10(7):R73. doi: 10.1186/gb-2009-10-7-r73. Epub 2009 Jul 9.

PMID:
19589141
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery.

Bertone P, Gerstein M, Snyder M.

Chromosome Res. 2005;13(3):259-74. Review.

PMID:
15868420
[PubMed - indexed for MEDLINE]
7.

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284. doi: 10.1186/1471-2105-9-284.

PMID:
18559105
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

MPDA: microarray pooled DNA analyzer.

Yang HC, Huang MC, Li LH, Lin CH, Yu AL, Diccianni MB, Wu JY, Chen YT, Fann CS.

BMC Bioinformatics. 2008 Apr 15;9:196. doi: 10.1186/1471-2105-9-196.

PMID:
18412951
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Applications of DNA tiling arrays for whole-genome analysis.

Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR.

Genomics. 2005 Jan;85(1):1-15. Review. Erratum in: Genomics. 2005 May;85(5):655. Chan, Simon [added]; Sundaresan, Ambika [added]; Chen, Huaming [added]; Jacobsen, Steven E [added].

PMID:
15607417
[PubMed - indexed for MEDLINE]
10.

Analysis of DNA strand-specific differential expression with high density tiling microarrays.

Quintales L, Sánchez M, Antequera F.

BMC Bioinformatics. 2010 Mar 17;11:136. doi: 10.1186/1471-2105-11-136.

PMID:
20233458
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Reconstructing the temporal ordering of biological samples using microarray data.

Magwene PM, Lizardi P, Kim J.

Bioinformatics. 2003 May 1;19(7):842-50.

PMID:
12724294
[PubMed - indexed for MEDLINE]
Free Article
12.

Microarray methods in Drosophila neurobiology.

Mee CJ.

Invert Neurosci. 2005 Nov;5(3-4):189-95. Epub 2005 Oct 24.

PMID:
16180035
[PubMed - indexed for MEDLINE]
13.

Using expression arrays for copy number detection: an example from E. coli.

Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S.

BMC Bioinformatics. 2007 Jun 14;8:203.

PMID:
17570850
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Utilizing tiling microarrays for whole-genome analysis in plants.

Gregory BD, Yazaki J, Ecker JR.

Plant J. 2008 Feb;53(4):636-44. doi: 10.1111/j.1365-313X.2007.03320.x. Review.

PMID:
18269573
[PubMed - indexed for MEDLINE]
15.

Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.

Thomassen GO, Rowe AD, Lagesen K, Lindvall JM, Rognes T.

PLoS One. 2009 Jun 17;4(6):e5943. doi: 10.1371/journal.pone.0005943.

PMID:
19536279
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Spot detection and image segmentation in DNA microarray data.

Qin L, Rueda L, Ali A, Ngom A.

Appl Bioinformatics. 2005;4(1):1-11. Review.

PMID:
16000008
[PubMed - indexed for MEDLINE]
17.

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB.

Genome Res. 2007 Jun;17(6):886-97. Epub 2006 Nov 21.

PMID:
17119069
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Robust detection and genotyping of single feature polymorphisms from gene expression data.

Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

PLoS Comput Biol. 2009 Mar;5(3):e1000317. doi: 10.1371/journal.pcbi.1000317. Epub 2009 Mar 13.

PMID:
19282978
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Microarray analysis: genome-scale hypothesis scanning.

Gibson G.

PLoS Biol. 2003 Oct;1(1):E15. Epub 2003 Oct 13. Review. No abstract available.

PMID:
14551912
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcript mapping with high-density oligonucleotide tiling arrays.

Huber W, Toedling J, Steinmetz LM.

Bioinformatics. 2006 Aug 15;22(16):1963-70. Epub 2006 Jun 20.

PMID:
16787969
[PubMed - indexed for MEDLINE]
Free Article

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