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Items: 1 to 20 of 82

1.

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing.

Wederell ED, Bilenky M, Cullum R, Thiessen N, Dagpinar M, Delaney A, Varhol R, Zhao Y, Zeng T, Bernier B, Ingham M, Hirst M, Robertson G, Marra MA, Jones S, Hoodless PA.

Nucleic Acids Res. 2008 Aug;36(14):4549-64. doi: 10.1093/nar/gkn382. Epub 2008 Jul 8.

2.

Cis-regulatory modules in the mammalian liver: composition depends on strength of Foxa2 consensus site.

Tuteja G, Jensen ST, White P, Kaestner KH.

Nucleic Acids Res. 2008 Jul;36(12):4149-57. doi: 10.1093/nar/gkn366. Epub 2008 Jun 13.

3.

Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing.

Wallerman O, Motallebipour M, Enroth S, Patra K, Bysani MS, Komorowski J, Wadelius C.

Nucleic Acids Res. 2009 Dec;37(22):7498-508. doi: 10.1093/nar/gkp823. Epub .

4.

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding.

Robertson AG, Bilenky M, Tam A, Zhao Y, Zeng T, Thiessen N, Cezard T, Fejes AP, Wederell ED, Cullum R, Euskirchen G, Krzywinski M, Birol I, Snyder M, Hoodless PA, Hirst M, Marra MA, Jones SJ.

Genome Res. 2008 Dec;18(12):1906-17. doi: 10.1101/gr.078519.108. Epub 2008 Sep 11.

5.

Genome-wide analyses of ChIP-Seq derived FOXA2 DNA occupancy in liver points to genetic networks underpinning multiple complex traits.

Johnson ME, Schug J, Wells AD, Kaestner KH, Grant SF.

J Clin Endocrinol Metab. 2014 Aug;99(8):E1580-5. doi: 10.1210/jc.2013-4503. Epub 2014 May 30.

6.

Extracting transcription factor targets from ChIP-Seq data.

Tuteja G, White P, Schug J, Kaestner KH.

Nucleic Acids Res. 2009 Sep;37(17):e113. doi: 10.1093/nar/gkp536. Epub 2009 Jun 24.

7.

Transcriptional networks in the liver: hepatocyte nuclear factor 6 function is largely independent of Foxa2.

Rubins NE, Friedman JR, Le PP, Zhang L, Brestelli J, Kaestner KH.

Mol Cell Biol. 2005 Aug;25(16):7069-77.

8.

Foxa2-dependent hepatic gene regulatory networks depend on physiological state.

Bochkis IM, Schug J, Rubins NE, Chopra AR, O'Malley BW, Kaestner KH.

Physiol Genomics. 2009 Jul 9;38(2):186-95. doi: 10.1152/physiolgenomics.90376.2008. Epub 2009 May 5.

9.

Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord.

Tamplin OJ, Cox BJ, Rossant J.

Dev Biol. 2011 Dec 15;360(2):415-25. doi: 10.1016/j.ydbio.2011.10.002. Epub 2011 Oct 8.

10.

Strategies to fine-map genetic associations with lipid levels by combining epigenomic annotations and liver-specific transcription profiles.

Lo KS, Vadlamudi S, Fogarty MP, Mohlke KL, Lettre G.

Genomics. 2014 Aug;104(2):105-12. doi: 10.1016/j.ygeno.2014.04.006. Epub 2014 Jul 2.

11.

Genome-wide location analysis reveals distinct transcriptional circuitry by paralogous regulators Foxa1 and Foxa2.

Bochkis IM, Schug J, Ye DZ, Kurinna S, Stratton SA, Barton MC, Kaestner KH.

PLoS Genet. 2012;8(6):e1002770. doi: 10.1371/journal.pgen.1002770. Epub 2012 Jun 21.

12.

Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors.

Metzakopian E, Lin W, Salmon-Divon M, Dvinge H, Andersson E, Ericson J, Perlmann T, Whitsett JA, Bertone P, Ang SL.

Development. 2012 Jul;139(14):2625-34. doi: 10.1242/dev.081034. Epub 2012 Jun 13.

13.

Identification of DNA-dependent protein kinase as a cofactor for the forkhead transcription factor FoxA2.

Nock A, Ascano JM, Jones T, Barrero MJ, Sugiyama N, Tomita M, Ishihama Y, Malik S.

J Biol Chem. 2009 Jul 24;284(30):19915-26. doi: 10.1074/jbc.M109.016295. Epub 2009 May 28.

14.

Integrated chromatin immunoprecipitation sequencing and microarray analysis identifies FOXA2 target genes in the glands of the mouse uterus.

Filant J, Lydon JP, Spencer TE.

FASEB J. 2014 Jan;28(1):230-43. doi: 10.1096/fj.13-237446. Epub 2013 Sep 11.

15.

De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis.

Boeva V, Surdez D, Guillon N, Tirode F, Fejes AP, Delattre O, Barillot E.

Nucleic Acids Res. 2010 Jun;38(11):e126. doi: 10.1093/nar/gkq217. Epub 2010 Apr 7.

16.

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.

Jothi R, Cuddapah S, Barski A, Cui K, Zhao K.

Nucleic Acids Res. 2008 Sep;36(16):5221-31. doi: 10.1093/nar/gkn488. Epub 2008 Aug 6.

17.

Foxa2 regulates the expression of Nato3 in the floor plate by a novel evolutionarily conserved promoter.

Mansour AA, Nissim-Eliraz E, Zisman S, Golan-Lev T, Schatz O, Klar A, Ben-Arie N.

Mol Cell Neurosci. 2011 Jan;46(1):187-99. doi: 10.1016/j.mcn.2010.09.002. Epub 2010 Sep 16.

PMID:
20849957
18.

Foxa1 and Foxa2 interact with the androgen receptor to regulate prostate and epididymal genes differentially.

Yu X, Gupta A, Wang Y, Suzuki K, Mirosevich J, Orgebin-Crist MC, Matusik RJ.

Ann N Y Acad Sci. 2005 Dec;1061:77-93.

PMID:
16467259
19.

FOXA2 regulates a network of genes involved in critical functions of human intestinal epithelial cells.

Gosalia N, Yang R, Kerschner JL, Harris A.

Physiol Genomics. 2015 Jul;47(7):290-7. doi: 10.1152/physiolgenomics.00024.2015. Epub 2015 Apr 28.

PMID:
25921584
20.

Foxa2 may modulate hepatic apoptosis through the cIAP1 pathway.

Wang K, Brems JJ, Gamelli RL, Holterman AX.

Cell Signal. 2013 Apr;25(4):867-74. doi: 10.1016/j.cellsig.2012.12.012. Epub 2012 Dec 27.

PMID:
23275033
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