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Items: 1 to 20 of 111

1.

A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.

Chen HI, Hsu FH, Jiang Y, Tsai MH, Yang PC, Meltzer PS, Chuang EY, Chen Y.

Bioinformatics. 2008 Aug 15;24(16):1749-56. doi: 10.1093/bioinformatics/btn321. Epub 2008 Jul 4.

2.

Optimization of probe coverage for high-resolution oligonucleotide aCGH.

Lipson D, Yakhini Z, Aumann Y.

Bioinformatics. 2007 Jan 15;23(2):e77-83.

3.

Integrating copy number polymorphisms into array CGH analysis using a robust HMM.

Shah SP, Xuan X, DeLeeuw RJ, Khojasteh M, Lam WL, Ng R, Murphy KP.

Bioinformatics. 2006 Jul 15;22(14):e431-9.

4.

Modeling recurrent DNA copy number alterations in array CGH data.

Shah SP, Lam WL, Ng RT, Murphy KP.

Bioinformatics. 2007 Jul 1;23(13):i450-8.

5.

Continuous-index hidden Markov modelling of array CGH copy number data.

Stjernqvist S, Rydén T, Sköld M, Staaf J.

Bioinformatics. 2007 Apr 15;23(8):1006-14. Epub 2007 Feb 19.

6.

A fast and flexible method for the segmentation of aCGH data.

Ben-Yaacov E, Eldar YC.

Bioinformatics. 2008 Aug 15;24(16):i139-45. doi: 10.1093/bioinformatics/btn272.

7.

Flexible and accurate detection of genomic copy-number changes from aCGH.

Rueda OM, Díaz-Uriarte R.

PLoS Comput Biol. 2007 Jun;3(6):e122. Epub 2007 May 16.

8.

Spatial normalization of array-CGH data.

Neuvial P, Hupé P, Brito I, Liva S, Manié E, Brennetot C, Radvanyi F, Aurias A, Barillot E.

BMC Bioinformatics. 2006 May 22;7:264.

9.

Analysis of array CGH data for cancer studies using fused quantile regression.

Li Y, Zhu J.

Bioinformatics. 2007 Sep 15;23(18):2470-6. Epub 2007 Jul 20.

10.

A segmentation/clustering model for the analysis of array CGH data.

Picard F, Robin S, Lebarbier E, Daudin JJ.

Biometrics. 2007 Sep;63(3):758-66.

PMID:
17825008
11.

BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data.

Marioni JC, Thorne NP, Tavaré S.

Bioinformatics. 2006 May 1;22(9):1144-6. Epub 2006 Mar 13.

12.

Robust smooth segmentation approach for array CGH data analysis.

Huang J, Gusnanto A, O'Sullivan K, Staaf J, Borg A, Pawitan Y.

Bioinformatics. 2007 Sep 15;23(18):2463-9. Epub 2007 Jul 27.

13.

Using expression arrays for copy number detection: an example from E. coli.

Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S.

BMC Bioinformatics. 2007 Jun 14;8:203.

14.

CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations.

van Houte BP, Binsl TW, Hettling H, Pirovano W, Heringa J.

BMC Genomics. 2009 Aug 26;10:401. doi: 10.1186/1471-2164-10-401.

15.

Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model.

Broët P, Richardson S.

Bioinformatics. 2006 Apr 15;22(8):911-8. Epub 2006 Feb 2.

16.

Supervised Lowess normalization of comparative genome hybridization data--application to lactococcal strain comparisons.

van Hijum SA, Baerends RJ, Zomer AL, Karsens HA, Martin-Requena V, Trelles O, Kok J, Kuipers OP.

BMC Bioinformatics. 2008 Feb 11;9:93. doi: 10.1186/1471-2105-9-93.

17.

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB.

Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.

18.

Breakpoint identification and smoothing of array comparative genomic hybridization data.

Jong K, Marchiori E, Meijer G, Vaart AV, Ylstra B.

Bioinformatics. 2004 Dec 12;20(18):3636-7. Epub 2004 Jun 16.

19.

CGHcall: calling aberrations for array CGH tumor profiles.

van de Wiel MA, Kim KI, Vosse SJ, van Wieringen WN, Wilting SM, Ylstra B.

Bioinformatics. 2007 Apr 1;23(7):892-4. Epub 2007 Jan 31.

20.

Detection of DNA copy number alterations using penalized least squares regression.

Huang T, Wu B, Lizardi P, Zhao H.

Bioinformatics. 2005 Oct 15;21(20):3811-7. Epub 2005 Aug 30.

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