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Results: 1 to 20 of 96

Similar articles for PubMed (Select 18597684)

1.

Detection of co-eluted peptides using database search methods.

Alves G, Ogurtsov AY, Kwok S, Wu WW, Wang G, Shen RF, Yu YK.

Biol Direct. 2008 Jul 2;3:27. doi: 10.1186/1745-6150-3-27.

2.

Enhanced peptide quantification using spectral count clustering and cluster abundance.

Lee S, Kwon MS, Lee HJ, Paik YK, Tang H, Lee JK, Park T.

BMC Bioinformatics. 2011 Oct 28;12:423. doi: 10.1186/1471-2105-12-423.

3.

Increased identification of peptides by enhanced data processing of high-resolution MALDI TOF/TOF mass spectra prior to database searching.

Rejtar T, Chen HS, Andreev V, Moskovets E, Karger BL.

Anal Chem. 2004 Oct 15;76(20):6017-28.

PMID:
15481949
4.

Deconvolution of mixture spectra and increased throughput of peptide identification by utilization of intensified complementary ions formed in tandem mass spectrometry.

Kryuchkov F, Verano-Braga T, Hansen TA, Sprenger RR, Kjeldsen F.

J Proteome Res. 2013 Jul 5;12(7):3362-71. doi: 10.1021/pr400210m. Epub 2013 Jun 19.

PMID:
23725413
5.

A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls.

Titulaer MK, Siccama I, Dekker LJ, van Rijswijk AL, Heeren RM, Sillevis Smitt PA, Luider TM.

BMC Bioinformatics. 2006 Sep 5;7:403.

7.

'Information-Based-Acquisition' (IBA) technique with an ion-trap/time-of-flight mass spectrometer for high-throughput and reliable protein profiling.

Yokosuka T, Yoshinari K, Kobayashi K, Ohtake A, Hirabayashi A, Hashimoto Y, Waki I, Takao T.

Rapid Commun Mass Spectrom. 2006;20(17):2589-95.

PMID:
16897788
8.

A uniform proteomics MS/MS analysis platform utilizing open XML file formats.

Keller A, Eng J, Zhang N, Li XJ, Aebersold R.

Mol Syst Biol. 2005;1:2005.0017. Epub 2005 Aug 2.

9.
11.

Binomial probability distribution model-based protein identification algorithm for tandem mass spectrometry utilizing peak intensity information.

Xiao CL, Chen XZ, Du YL, Sun X, Zhang G, He QY.

J Proteome Res. 2013 Jan 4;12(1):328-35. doi: 10.1021/pr300781t. Epub 2012 Nov 29.

PMID:
23163785
12.

Peptides quantification by liquid chromatography with matrix-assisted laser desorption/ionization and selected reaction monitoring detection.

Lesur A, Varesio E, Domon B, Hopfgartner G.

J Proteome Res. 2012 Oct 5;11(10):4972-82. doi: 10.1021/pr300514u. Epub 2012 Aug 31.

PMID:
22897511
13.

Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns.

Volchenboum SL, Kristjansdottir K, Wolfgeher D, Kron SJ.

Mol Cell Proteomics. 2009 Aug;8(8):2011-22. doi: 10.1074/mcp.M800472-MCP200. Epub 2009 May 11.

14.

Peptide identification by database search of mixture tandem mass spectra.

Wang J, Bourne PE, Bandeira N.

Mol Cell Proteomics. 2011 Dec;10(12):M111.010017. doi: 10.1074/mcp.M111.010017. Epub 2011 Aug 23.

15.
16.

Calibrating E-values for MS2 database search methods.

Alves G, Ogurtsov AY, Wu WW, Wang G, Shen RF, Yu YK.

Biol Direct. 2007 Nov 5;2:26.

17.

A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins.

Yen CY, Meyer-Arendt K, Eichelberger B, Sun S, Houel S, Old WM, Knight R, Ahn NG, Hunter LE, Resing KA.

Mol Cell Proteomics. 2009 Apr;8(4):857-69. doi: 10.1074/mcp.M800384-MCP200. Epub 2008 Dec 22.

19.

Improving sensitivity in shotgun proteomics using a peptide-centric database with reduced complexity: protease cleavage and SCX elution rules from data mining of MS/MS spectra.

Yen CY, Russell S, Mendoza AM, Meyer-Arendt K, Sun S, Cios KJ, Ahn NG, Resing KA.

Anal Chem. 2006 Feb 15;78(4):1071-84.

PMID:
16478097
20.

Average peptide score: a useful parameter for identification of proteins derived from database searches of liquid chromatography/tandem mass spectrometry data.

Chepanoske CL, Richardson BE, von Rechenberg M, Peltier JM.

Rapid Commun Mass Spectrom. 2005;19(1):9-14.

PMID:
15573416
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