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Results: 1 to 20 of 203

1.

Protein multiple sequence alignment.

Do CB, Katoh K.

Methods Mol Biol. 2008;484:379-413. doi: 10.1007/978-1-59745-398-1_25. Review.

PMID:
18592193
[PubMed - indexed for MEDLINE]
2.

MUSTANG: a multiple structural alignment algorithm.

Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM.

Proteins. 2006 Aug 15;64(3):559-74.

PMID:
16736488
[PubMed - indexed for MEDLINE]
3.

COBALT: constraint-based alignment tool for multiple protein sequences.

Papadopoulos JS, Agarwala R.

Bioinformatics. 2007 May 1;23(9):1073-9. Epub 2007 Mar 1.

PMID:
17332019
[PubMed - indexed for MEDLINE]
Free Article
4.

Database similarity searches.

Plewniak F.

Methods Mol Biol. 2008;484:361-78. doi: 10.1007/978-1-59745-398-1_24.

PMID:
18592192
[PubMed - indexed for MEDLINE]
5.

The accuracy of several multiple sequence alignment programs for proteins.

Nuin PA, Wang Z, Tillier ER.

BMC Bioinformatics. 2006 Oct 24;7:471.

PMID:
17062146
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Multiple alignment of DNA sequences with MAFFT.

Katoh K, Asimenos G, Toh H.

Methods Mol Biol. 2009;537:39-64. doi: 10.1007/978-1-59745-251-9_3.

PMID:
19378139
[PubMed - indexed for MEDLINE]
7.

Multiple sequence alignment based on profile alignment of intermediate sequences.

Lu Y, Sze SH.

J Comput Biol. 2008 Sep;15(7):767-77. doi: 10.1089/cmb.2007.0132.

PMID:
18662101
[PubMed - indexed for MEDLINE]
8.

Sequence alignment for molecular replacement.

Barton GJ.

Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):25-32. Epub 2007 Dec 5.

PMID:
18094464
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Practical aspects of multiple sequence alignment.

Baxevanis AD.

Methods Biochem Anal. 1998;39:172-88. No abstract available.

PMID:
9707931
[PubMed - indexed for MEDLINE]
10.

QOMA: quasi-optimal multiple alignment of protein sequences.

Zhang X, Kahveci T.

Bioinformatics. 2007 Jan 15;23(2):162-8. Epub 2006 Nov 22.

PMID:
17121778
[PubMed - indexed for MEDLINE]
Free Article
11.
12.

Multiple sequence alignment.

Edgar RC, Batzoglou S.

Curr Opin Struct Biol. 2006 Jun;16(3):368-73. Epub 2006 May 5. Review.

PMID:
16679011
[PubMed - indexed for MEDLINE]
13.

The AMPS package for multiple protein sequence alignment.

Barton GJ.

Methods Mol Biol. 1994;25:327-47. No abstract available.

PMID:
8004175
[PubMed - indexed for MEDLINE]
14.

Identifying distantly related protein sequences.

Pearson WR.

Comput Appl Biosci. 1997 Aug;13(4):325-32. Review. No abstract available.

PMID:
9283747
[PubMed - indexed for MEDLINE]
15.

A comprehensive comparison of multiple sequence alignment programs.

Thompson JD, Plewniak F, Poch O.

Nucleic Acids Res. 1999 Jul 1;27(13):2682-90.

PMID:
10373585
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment.

Gupta SK, Kececioglu JD, Schäffer AA.

J Comput Biol. 1995 Fall;2(3):459-72.

PMID:
8521275
[PubMed - indexed for MEDLINE]
17.

Improvement of alignment accuracy utilizing sequentially conserved motifs.

Chakrabarti S, Bhardwaj N, Anand PA, Sowdhamini R.

BMC Bioinformatics. 2004 Oct 28;5:167.

PMID:
15509307
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A simple genetic algorithm for multiple sequence alignment.

Gondro C, Kinghorn BP.

Genet Mol Res. 2007 Oct 5;6(4):964-82.

PMID:
18058716
[PubMed - indexed for MEDLINE]
Free Article
19.

Using the FASTA program to search protein and DNA sequence databases.

Pearson WR.

Methods Mol Biol. 1994;25:365-89. No abstract available.

PMID:
8004177
[PubMed - indexed for MEDLINE]
20.

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