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Revealing the dynamics of the 20 S proteasome phosphoproteome: a combined CID and electron transfer dissociation approach.

Lu H, Zong C, Wang Y, Young GW, Deng N, Souda P, Li X, Whitelegge J, Drews O, Yang PY, Ping P.

Mol Cell Proteomics. 2008 Nov;7(11):2073-89. doi: 10.1074/mcp.M800064-MCP200. Epub 2008 Jun 25.


Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria.

Deng N, Zhang J, Zong C, Wang Y, Lu H, Yang P, Wang W, Young GW, Wang Y, Korge P, Lotz C, Doran P, Liem DA, Apweiler R, Weiss JN, Duan H, Ping P.

Mol Cell Proteomics. 2011 Feb;10(2):M110.000117. doi: 10.1074/mcp.M110.000117. Epub 2010 May 22.


Regulation of murine cardiac 20S proteasomes: role of associating partners.

Zong C, Gomes AV, Drews O, Li X, Young GW, Berhane B, Qiao X, French SW, Bardag-Gorce F, Ping P.

Circ Res. 2006 Aug 18;99(4):372-80. Epub 2006 Jul 20.


Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Molina H, Horn DM, Tang N, Mathivanan S, Pandey A.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2199-204. Epub 2007 Feb 7.


Mapping the murine cardiac 26S proteasome complexes.

Gomes AV, Zong C, Edmondson RD, Li X, Stefani E, Zhang J, Jones RC, Thyparambil S, Wang GW, Qiao X, Bardag-Gorce F, Ping P.

Circ Res. 2006 Aug 18;99(4):362-71. Epub 2006 Jul 20.


Comprehensive mass spectrometric analysis of the 20S proteasome complex.

Huang L, Burlingame AL.

Methods Enzymol. 2005;405:187-236. Review.


Cardiac myosin-binding protein C (MyBP-C): identification of protein kinase A and protein kinase C phosphorylation sites.

Mohamed AS, Dignam JD, Schlender KK.

Arch Biochem Biophys. 1998 Oct 15;358(2):313-9.


Contrasting proteome biology and functional heterogeneity of the 20 S proteasome complexes in mammalian tissues.

Gomes AV, Young GW, Wang Y, Zong C, Eghbali M, Drews O, Lu H, Stefani E, Ping P.

Mol Cell Proteomics. 2009 Feb;8(2):302-15. doi: 10.1074/mcp.M800058-MCP200. Epub 2008 Oct 17.


Mammalian proteasome subpopulations with distinct molecular compositions and proteolytic activities.

Drews O, Wildgruber R, Zong C, Sukop U, Nissum M, Weber G, Gomes AV, Ping P.

Mol Cell Proteomics. 2007 Nov;6(11):2021-31. Epub 2007 Jul 27.


Mass spectrometric characterization of the affinity-purified human 26S proteasome complex.

Wang X, Chen CF, Baker PR, Chen PL, Kaiser P, Huang L.

Biochemistry. 2007 Mar 20;46(11):3553-65. Epub 2007 Feb 27.


Differential regulation of proteasome function in isoproterenol-induced cardiac hypertrophy.

Drews O, Tsukamoto O, Liem D, Streicher J, Wang Y, Ping P.

Circ Res. 2010 Oct 29;107(9):1094-101. doi: 10.1161/CIRCRESAHA.110.222364. Epub 2010 Sep 2.


Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis.

Han G, Ye M, Liu H, Song C, Sun D, Wu Y, Jiang X, Chen R, Wang C, Wang L, Zou H.

Electrophoresis. 2010 Mar;31(6):1080-9. doi: 10.1002/elps.200900493.


Phosphorylation of B14.5a subunit from bovine heart complex I identified by titanium dioxide selective enrichment and shotgun proteomics.

Pocsfalvi G, Cuccurullo M, Schlosser G, Scacco S, Papa S, Malorni A.

Mol Cell Proteomics. 2007 Feb;6(2):231-7. Epub 2006 Nov 17.


Electron transfer dissociation in conjunction with collision activation to investigate the Drosophila melanogaster phosphoproteome.

Domon B, Bodenmiller B, Carapito C, Hao Z, Huehmer A, Aebersold R.

J Proteome Res. 2009 Jun;8(6):2633-9. doi: 10.1021/pr800834e.


The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.

Macek B, Mijakovic I, Olsen JV, Gnad F, Kumar C, Jensen PR, Mann M.

Mol Cell Proteomics. 2007 Apr;6(4):697-707. Epub 2007 Jan 10.


Identification of novel in vitro PKA phosphorylation sites on the low and middle molecular mass neurofilament subunits by mass spectrometry.

Cleverley KE, Betts JC, Blackstock WP, Gallo JM, Anderton BH.

Biochemistry. 1998 Mar 17;37(11):3917-30.


Analysis of the phosphoproteome of the multicellular bacterium Streptomyces coelicolor A3(2) by protein/peptide fractionation, phosphopeptide enrichment and high-accuracy mass spectrometry.

Parker JL, Jones AM, Serazetdinova L, Saalbach G, Bibb MJ, Naldrett MJ.

Proteomics. 2010 Jul;10(13):2486-97. doi: 10.1002/pmic.201000090. Erratum in: Proteomics. 2010 Aug;10(16):3056.


AKAP15 anchors cAMP-dependent protein kinase to brain sodium channels.

Tibbs VC, Gray PC, Catterall WA, Murphy BJ.

J Biol Chem. 1998 Oct 2;273(40):25783-8.


Proteome dynamics and proteome function of cardiac 19S proteasomes.

Wang D, Zong C, Koag MC, Wang Y, Drews O, Fang C, Scruggs SB, Ping P.

Mol Cell Proteomics. 2011 May;10(5):M110.006122. doi: 10.1074/mcp.M110.006122. Epub 2011 Feb 25.

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