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Similar articles for PubMed (Select 18574859)

1.

On preprocessing and antisymmetry in de novo peptide sequencing: improving efficiency and accuracy.

Ning K, Ye N, Leong HW.

J Bioinform Comput Biol. 2008 Jun;6(3):467-92.

PMID:
18574859
3.

Complexity and scoring function of MS/MS peptide de novo sequencing.

Xu C, Ma B.

Comput Syst Bioinformatics Conf. 2006:361-9.

4.

Proteomics-grade de novo sequencing approach.

Savitski MM, Nielsen ML, Kjeldsen F, Zubarev RA.

J Proteome Res. 2005 Nov-Dec;4(6):2348-54.

PMID:
16335984
5.

De novo sequencing methods in proteomics.

Hughes C, Ma B, Lajoie GA.

Methods Mol Biol. 2010;604:105-21. doi: 10.1007/978-1-60761-444-9_8.

PMID:
20013367
6.

Assessing peptide de novo sequencing algorithms performance on large and diverse data sets.

Pitzer E, Masselot A, Colinge J.

Proteomics. 2007 Sep;7(17):3051-4.

PMID:
17683051
7.

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.

Bandeira N, Olsen JV, Mann JV, Mann M, Pevzner PA.

Bioinformatics. 2008 Jul 1;24(13):i416-23.

8.

Algorithms for the de novo sequencing of peptides from tandem mass spectra.

Allmer J.

Expert Rev Proteomics. 2011 Oct;8(5):645-57. doi: 10.1586/epr.11.54. Review.

PMID:
21999834
9.
10.

pNovo: de novo peptide sequencing and identification using HCD spectra.

Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ.

J Proteome Res. 2010 May 7;9(5):2713-24. doi: 10.1021/pr100182k.

PMID:
20329752
11.

On peptide de novo sequencing: a new approach.

Bruni R, Gianfranceschi G, Koch G.

J Pept Sci. 2005 Apr;11(4):225-34.

PMID:
15635630
12.

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

Pan C, Park BH, McDonald WH, Carey PA, Banfield JF, VerBerkmoes NC, Hettich RL, Samatova NF.

BMC Bioinformatics. 2010 Mar 5;11:118. doi: 10.1186/1471-2105-11-118.

13.

DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.

Halligan BD, Ruotti V, Twigger SN, Greene AS.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W376-81.

14.

Protocols for peptidomic analysis of spider venoms.

Songping L.

Methods Mol Biol. 2010;615:75-85. doi: 10.1007/978-1-60761-535-4_6.

PMID:
20013201
15.

Modeling and characterization of multi-charge mass spectra for peptide sequencing.

Chong KF, Ning K, Leong HW, Pevzner P.

J Bioinform Comput Biol. 2006 Dec;4(6):1329-52.

PMID:
17245817
16.

MSNovo: a dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry.

Mo L, Dutta D, Wan Y, Chen T.

Anal Chem. 2007 Jul 1;79(13):4870-8. Epub 2007 Jun 6.

PMID:
17550227
17.

The ABC's (and XYZ's) of peptide sequencing.

Steen H, Mann M.

Nat Rev Mol Cell Biol. 2004 Sep;5(9):699-711. Review.

PMID:
15340378
18.

High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.

Searle BC, Dasari S, Turner M, Reddy AP, Choi D, Wilmarth PA, McCormack AL, David LL, Nagalla SR.

Anal Chem. 2004 Apr 15;76(8):2220-30.

PMID:
15080731
19.

Interpretation of shotgun proteomic data: the protein inference problem.

Nesvizhskii AI, Aebersold R.

Mol Cell Proteomics. 2005 Oct;4(10):1419-40. Epub 2005 Jul 11.

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