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Results: 1 to 20 of 94

Similar articles for PubMed (Select 18566966)

1.

MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences.

Brandon MC, Ruiz-Pesini E, Mishmar D, Procaccio V, Lott MT, Nguyen KC, Spolim S, Patil U, Baldi P, Wallace DC.

Hum Mutat. 2009 Jan;30(1):1-6. doi: 10.1002/humu.20801.

2.

Mitochondrial cardiomyopathies: how to identify candidate pathogenic mutations by mitochondrial DNA sequencing, MITOMASTER and phylogeny.

Zaragoza MV, Brandon MC, Diegoli M, Arbustini E, Wallace DC.

Eur J Hum Genet. 2011 Feb;19(2):200-7. doi: 10.1038/ejhg.2010.169. Epub 2010 Oct 27.

3.

mtDNA Variation and Analysis Using MITOMAP and MITOMASTER.

Lott MT, Leipzig JN, Derbeneva O, Xie HM, Chalkia D, Sarmady M, Procaccio V, Wallace DC.

Curr Protoc Bioinformatics. 2013 Dec 12;1(123):1.23.1-1.23.26.

4.

mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial DNA control-region sequences.

Lee HY, Song I, Ha E, Cho SB, Yang WI, Shin KJ.

BMC Bioinformatics. 2008 Nov 17;9:483. doi: 10.1186/1471-2105-9-483.

5.

HAPLOFIND: a new method for high-throughput mtDNA haplogroup assignment.

Vianello D, Sevini F, Castellani G, Lomartire L, Capri M, Franceschi C.

Hum Mutat. 2013 Sep;34(9):1189-94. doi: 10.1002/humu.22356. Epub 2013 Jun 12.

PMID:
23696374
6.

eCOMPAGT integrates mtDNA: import, validation and export of mitochondrial DNA profiles for population genetics, tumour dynamics and genotype-phenotype association studies.

Weissensteiner H, Schönherr S, Specht G, Kronenberg F, Brandstätter A.

BMC Bioinformatics. 2010 Mar 9;11:122. doi: 10.1186/1471-2105-11-122.

7.

An enhanced MITOMAP with a global mtDNA mutational phylogeny.

Ruiz-Pesini E, Lott MT, Procaccio V, Poole JC, Brandon MC, Mishmar D, Yi C, Kreuziger J, Baldi P, Wallace DC.

Nucleic Acids Res. 2007 Jan;35(Database issue):D823-8. Epub 2006 Dec 18.

8.

MtDNA GeneExtractor: a computer tool for mtDNA gene/region information extraction.

Freitas F, Oliveira S, Rocha R, Pereira L.

Mitochondrion. 2009 Feb;9(1):36-40. doi: 10.1016/j.mito.2008.11.003. Epub 2008 Dec 3.

PMID:
19070686
9.

CSA: an efficient algorithm to improve circular DNA multiple alignment.

Fernandes F, Pereira L, Freitas AT.

BMC Bioinformatics. 2009 Jul 23;10:230. doi: 10.1186/1471-2105-10-230.

10.

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.

Calabrese C, Simone D, Diroma MA, Santorsola M, Guttà C, Gasparre G, Picardi E, Pesole G, Attimonelli M.

Bioinformatics. 2014 Nov 1;30(21):3115-7. doi: 10.1093/bioinformatics/btu483. Epub 2014 Jul 14.

11.

Haplogrouping mitochondrial DNA sequences in Legal Medicine/Forensic Genetics.

Bandelt HJ, van Oven M, Salas A.

Int J Legal Med. 2012 Nov;126(6):901-16. doi: 10.1007/s00414-012-0762-y. Epub 2012 Sep 1.

PMID:
22940763
12.

mtDNAprofiler: a Web application for the nomenclature and comparison of human mitochondrial DNA sequences.

Yang IS, Lee HY, Yang WI, Shin KJ.

J Forensic Sci. 2013 Jul;58(4):972-80. doi: 10.1111/1556-4029.12139. Epub 2013 May 17.

PMID:
23682804
13.

HmtDB, a genomic resource for mitochondrion-based human variability studies.

Rubino F, Piredda R, Calabrese FM, Simone D, Lang M, Calabrese C, Petruzzella V, Tommaseo-Ponzetta M, Gasparre G, Attimonelli M.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1150-9. doi: 10.1093/nar/gkr1086. Epub 2011 Dec 1.

14.

V-MitoSNP: visualization of human mitochondrial SNPs.

Chuang LY, Yang CH, Cheng YH, Gu DL, Chang PL, Tsui KH, Chang HW.

BMC Bioinformatics. 2006 Aug 15;7:379.

15.

Genome digging: insight into the mitochondrial genome of Homo.

Ovchinnikov IV, Kholina OI.

PLoS One. 2010 Dec 9;5(12):e14278. doi: 10.1371/journal.pone.0014278.

16.

A novel partial sequence alignment tool for finding large deletions.

Aruk T, Ustek D, Kursun O.

ScientificWorldJournal. 2012;2012:694813. doi: 10.1100/2012/694813. Epub 2012 Apr 1.

17.

PROBEmer: A web-based software tool for selecting optimal DNA oligos.

Emrich SJ, Lowe M, Delcher AL.

Nucleic Acids Res. 2003 Jul 1;31(13):3746-50.

18.

MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease.

Bhardwaj A, Mukerji M, Sharma S, Paul J, Gokhale CS, Srivastava AK, Tiwari S.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S7. doi: 10.1186/1471-2105-10-S8-S7.

19.

BLAST Filter and GraphAlign: rule-based formation and analysis of sets of related DNA and protein sequences.

Spalding JB, Lammers PJ.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W26-32.

20.

Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations.

Tong MY, Cassa CA, Kohane IS.

Bioinformatics. 2011 Mar 15;27(6):891-3. doi: 10.1093/bioinformatics/btr029. Epub 2011 Jan 22.

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