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Results: 1 to 20 of 131

1.

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.

Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ.

Curr Biol. 2008 May 20;18(10):758-62. doi: 10.1016/j.cub.2008.04.042. Epub 2008 May 8.

PMID:
18472421
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.

Wang XJ, Reyes JL, Chua NH, Gaasterland T.

Genome Biol. 2004;5(9):R65. Epub 2004 Aug 31.

PMID:
15345049
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Transcriptome-wide identification of microRNA targets in rice.

Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R.

Plant J. 2010 Jun 1;62(5):742-59. doi: 10.1111/j.1365-313X.2010.04187.x. Epub 2010 Feb 26.

PMID:
20202174
[PubMed - indexed for MEDLINE]
4.

Genome-wide identification of small RNA targets based on target enrichment and microarray hybridizations.

Franco-Zorrilla JM, Del Toro FJ, Godoy M, Pérez-Pérez J, López-Vidriero I, Oliveros JC, García-Casado G, Llave C, Solano R.

Plant J. 2009 Sep;59(5):840-50. doi: 10.1111/j.1365-313X.2009.03904.x. Epub 2009 May 2.

PMID:
19453461
[PubMed - indexed for MEDLINE]
5.

SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants.

Zheng Y, Li YF, Sunkar R, Zhang W.

Nucleic Acids Res. 2012 Feb;40(4):e28. doi: 10.1093/nar/gkr1092. Epub 2011 Dec 2.

PMID:
22140118
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing.

Shamimuzzaman M, Vodkin L.

BMC Genomics. 2012 Jul 16;13:310. doi: 10.1186/1471-2164-13-310.

PMID:
22799740
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Common functions for diverse small RNAs of land plants.

Axtell MJ, Snyder JA, Bartel DP.

Plant Cell. 2007 Jun;19(6):1750-69. Epub 2007 Jun 29.

PMID:
17601824
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.

Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crété P.

Mol Cell. 2004 Oct 8;16(1):69-79.

PMID:
15469823
[PubMed - indexed for MEDLINE]
Free Article
9.

DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7.

Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouché N, Gasciolli V, Vaucheret H.

Curr Biol. 2006 May 9;16(9):927-32.

PMID:
16682354
[PubMed - indexed for MEDLINE]
Free Article
10.

Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis.

Yang X, Wang L, Yuan D, Lindsey K, Zhang X.

J Exp Bot. 2013 Apr;64(6):1521-36. doi: 10.1093/jxb/ert013. Epub 2013 Feb 4.

PMID:
23382553
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing.

Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ.

Plant Physiol. 2009 Dec;151(4):2120-32. doi: 10.1104/pp.109.147280. Epub 2009 Oct 23.

PMID:
19854858
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481. doi: 10.1186/1471-2164-8-481.

PMID:
18166134
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.

German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ.

Nat Biotechnol. 2008 Aug;26(8):941-6. doi: 10.1038/nbt1417. Epub 2008 Jun 9.

PMID:
18542052
[PubMed - indexed for MEDLINE]
14.

miRNAs in the biogenesis of trans-acting siRNAs in higher plants.

Allen E, Howell MD.

Semin Cell Dev Biol. 2010 Oct;21(8):798-804. doi: 10.1016/j.semcdb.2010.03.008. Epub 2010 Mar 30. Review.

PMID:
20359543
[PubMed - indexed for MEDLINE]
15.

microRNA-directed phasing during trans-acting siRNA biogenesis in plants.

Allen E, Xie Z, Gustafson AM, Carrington JC.

Cell. 2005 Apr 22;121(2):207-21.

PMID:
15851028
[PubMed - indexed for MEDLINE]
Free Article
16.

Arabidopsis small RNAs and their targets during cyst nematode parasitism.

Hewezi T, Howe P, Maier TR, Baum TJ.

Mol Plant Microbe Interact. 2008 Dec;21(12):1622-34. doi: 10.1094/MPMI-21-12-1622.

PMID:
18986258
[PubMed - indexed for MEDLINE]
Free Article
17.

Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

Li J, Yang Z, Yu B, Liu J, Chen X.

Curr Biol. 2005 Aug 23;15(16):1501-7.

PMID:
16111943
[PubMed - indexed for MEDLINE]
Free Article
18.

Analyses of a Glycine max degradome library identify microRNA targets and microRNAs that trigger secondary siRNA biogenesis.

Hu Z, Jiang Q, Ni Z, Chen R, Xu S, Zhang H.

J Integr Plant Biol. 2013 Feb;55(2):160-76. doi: 10.1111/jipb.12002.

PMID:
23131131
[PubMed - indexed for MEDLINE]
19.

Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance.

Boutet S, Vazquez F, Liu J, Béclin C, Fagard M, Gratias A, Morel JB, Crété P, Chen X, Vaucheret H.

Curr Biol. 2003 May 13;13(10):843-8.

PMID:
12747833
[PubMed - indexed for MEDLINE]
Free Article
20.

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.

Addo-Quaye C, Miller W, Axtell MJ.

Bioinformatics. 2009 Jan 1;25(1):130-1. doi: 10.1093/bioinformatics/btn604. Epub 2008 Nov 18.

PMID:
19017659
[PubMed - indexed for MEDLINE]
Free PMC Article

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