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Items: 1 to 20 of 249

1.

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).

Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS.

Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403. Epub 2008 May 4. Erratum in: Nat Biotechnol. 2008 Oct;26(10):1193.. Barbote, Ravi [corrected to Barabote, Ravi].

PMID:
18454138
2.

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.

Le Crom S, Schackwitz W, Pennacchio L, Magnuson JK, Culley DE, Collett JR, Martin J, Druzhinina IS, Mathis H, Monot F, Seiboth B, Cherry B, Rey M, Berka R, Kubicek CP, Baker SE, Margeot A.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16151-6. doi: 10.1073/pnas.0905848106. Epub 2009 Sep 2.

3.

Molecular evidence that the asexual industrial fungus Trichoderma reesei is a clonal derivative of the ascomycete Hypocrea jecorina.

Kuhls K, Lieckfeldt E, Samuels GJ, Kovacs W, Meyer W, Petrini O, Gams W, Börner T, Kubicek CP.

Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7755-60.

4.

Insight into Trichoderma reesei's genome content, organization and evolution revealed through BAC library characterization.

Diener SE, Chellappan MK, Mitchell TK, Dunn-Coleman N, Ward M, Dean RA.

Fungal Genet Biol. 2004 Dec;41(12):1077-87.

PMID:
15531212
5.
6.

The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina).

Saloheimo M, Pakula TM.

Microbiology. 2012 Jan;158(Pt 1):46-57. doi: 10.1099/mic.0.053132-0. Epub 2011 Nov 3. Review.

PMID:
22053009
7.

Evolution and ecophysiology of the industrial producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a new sympatric agamospecies related to it.

Druzhinina IS, Komoń-Zelazowska M, Atanasova L, Seidl V, Kubicek CP.

PLoS One. 2010 Feb 12;5(2):e9191. doi: 10.1371/journal.pone.0009191.

8.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol. 2011;12(4):R40. doi: 10.1186/gb-2011-12-4-r40. Epub 2011 Apr 18.

9.

Cellulase formation by species of Trichoderma sect. Longibrachiatum and of Hypocrea spp. with anamorphs referable to Trichoderma sect. Longibrachiatum.

Kubicek CP, Bölzlbauer UM, Kovacs W, Mach RL, Kuhls K, Lieckfeldt E, Börner T, Samuels GJ.

Fungal Genet Biol. 1996 Jun;20(2):105-14.

PMID:
8810515
10.

Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties.

Vitikainen M, Arvas M, Pakula T, Oja M, Penttilä M, Saloheimo M.

BMC Genomics. 2010 Jul 19;11:441. doi: 10.1186/1471-2164-11-441.

11.
12.

Agrobacterium-mediated transformation (AMT) of Trichoderma reesei as an efficient tool for random insertional mutagenesis.

Zhong YH, Wang XL, Wang TH, Jiang Q.

Appl Microbiol Biotechnol. 2007 Jan;73(6):1348-54. Epub 2006 Oct 5.

PMID:
17021875
13.

The ire1 and ptc2 genes involved in the unfolded protein response pathway in the filamentous fungus Trichoderma reesei.

Valkonen M, Penttilä M, Saloheimo M.

Mol Genet Genomics. 2004 Nov;272(4):443-51. Epub 2004 Oct 8.

PMID:
15480788
15.

A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases.

Seidl V, Huemer B, Seiboth B, Kubicek CP.

FEBS J. 2005 Nov;272(22):5923-39.

16.

Electrophoretic karyotype and gene assignment to resolved chromosomes of Trichoderma spp.

Herrera-Estrella A, Goldman GH, van Montagu M, Geremia RA.

Mol Microbiol. 1993 Feb;7(4):515-21.

PMID:
8459771
17.

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates.

Häkkinen M, Arvas M, Oja M, Aro N, Penttilä M, Saloheimo M, Pakula TM.

Microb Cell Fact. 2012 Oct 4;11:134. doi: 10.1186/1475-2859-11-134.

18.

Interactions of the Trichoderma reesei rho3 with the secretory pathway in yeast and T. reesei.

Vasara T, Salusjärvi L, Raudaskoski M, Keränen S, Penttilä M, Saloheimo M.

Mol Microbiol. 2001 Dec;42(5):1349-61.

19.

Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei).

Stricker AR, Mach RL, de Graaff LH.

Appl Microbiol Biotechnol. 2008 Feb;78(2):211-20. doi: 10.1007/s00253-007-1322-0. Epub 2008 Jan 16. Review.

PMID:
18197406
20.

Trichoderma reesei sequences that bind to the nuclear matrix enhance transformation frequency.

Belshaw NJ, Hakola S, Nevalainen H, Penttilä M, Suominen P, Archer DB.

Mol Gen Genet. 1997 Sep;256(1):18-27.

PMID:
9341675
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