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Results: 1 to 20 of 119

1.

Inferring microRNA activities by combining gene expression with microRNA target prediction.

Cheng C, Li LM.

PLoS One. 2008 Apr 23;3(4):e1989. doi: 10.1371/journal.pone.0001989.

PMID:
18431476
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PMTED: a plant microRNA target expression database.

Sun X, Dong B, Yin L, Zhang R, Du W, Liu D, Shi N, Li A, Liang Y, Mao L.

BMC Bioinformatics. 2013 Jun 3;14:174. doi: 10.1186/1471-2105-14-174.

PMID:
23725466
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Analyzing miRNA co-expression networks to explore TF-miRNA regulation.

Bandyopadhyay S, Bhattacharyya M.

BMC Bioinformatics. 2009 May 28;10:163. doi: 10.1186/1471-2105-10-163.

PMID:
19476620
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Identifying co-regulating microRNA groups.

An J, Choi KP, Wells CA, Chen YP.

J Bioinform Comput Biol. 2010 Feb;8(1):99-115.

PMID:
20183876
[PubMed - indexed for MEDLINE]
5.

Increasing MicroRNA target prediction confidence by the relative R(2) method.

Wang H, Li WH.

J Theor Biol. 2009 Aug 21;259(4):793-8. doi: 10.1016/j.jtbi.2009.05.007. Epub 2009 May 20.

PMID:
19463832
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers.

Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, Aicher LD, Proll S, Katze MG.

BMC Genomics. 2009 Aug 11;10:373. doi: 10.1186/1471-2164-10-373.

PMID:
19671175
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Characterization of human platelet microRNA by quantitative PCR coupled with an annotation network for predicted target genes.

Osman A, Fälker K.

Platelets. 2011;22(6):433-41. doi: 10.3109/09537104.2011.560305. Epub 2011 Mar 25.

PMID:
21438667
[PubMed - indexed for MEDLINE]
8.

Identification and target prediction of miRNAs specifically expressed in rat neural tissue.

Hua YJ, Tang ZY, Tu K, Zhu L, Li YX, Xie L, Xiao HS.

BMC Genomics. 2009 May 9;10:214. doi: 10.1186/1471-2164-10-214.

PMID:
19426523
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Identification of microRNA-mRNA modules using microarray data.

Jayaswal V, Lutherborrow M, Ma DD, Yang YH.

BMC Genomics. 2011 Mar 6;12:138. doi: 10.1186/1471-2164-12-138.

PMID:
21375780
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MicroRNA target prediction by expression analysis of host genes.

Gennarino VA, Sardiello M, Avellino R, Meola N, Maselli V, Anand S, Cutillo L, Ballabio A, Banfi S.

Genome Res. 2009 Mar;19(3):481-90. doi: 10.1101/gr.084129.108. Epub 2008 Dec 16.

PMID:
19088304
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Finding microRNA regulatory modules in human genome using rule induction.

Tran DH, Satou K, Ho TB.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S5. doi: 10.1186/1471-2105-9-S12-S5.

PMID:
19091028
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification and characteristics of microRNAs from Bombyx mori.

He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y.

BMC Genomics. 2008 May 28;9:248. doi: 10.1186/1471-2164-9-248.

PMID:
18507836
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Detecting microRNA activity from gene expression data.

Madden SF, Carpenter SB, Jeffery IB, Björkbacka H, Fitzgerald KA, O'Neill LA, Higgins DG.

BMC Bioinformatics. 2010 May 18;11:257. doi: 10.1186/1471-2105-11-257.

PMID:
20482775
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The DIANA-mirExTra web server: from gene expression data to microRNA function.

Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG.

PLoS One. 2010 Feb 11;5(2):e9171. doi: 10.1371/journal.pone.0009171.

PMID:
20161787
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Human microRNA target identification by RRSM.

Hsieh WJ, Wang H.

J Theor Biol. 2011 Oct 7;286(1):79-84. doi: 10.1016/j.jtbi.2011.06.022. Epub 2011 Jun 29.

PMID:
21736879
[PubMed - indexed for MEDLINE]
16.

Prioritizing candidate disease miRNAs by topological features in the miRNA target-dysregulated network: case study of prostate cancer.

Xu J, Li CX, Lv JY, Li YS, Xiao Y, Shao TT, Huo X, Li X, Zou Y, Han QL, Li X, Wang LH, Ren H.

Mol Cancer Ther. 2011 Oct;10(10):1857-66. doi: 10.1158/1535-7163.MCT-11-0055. Epub 2011 Jul 18.

PMID:
21768329
[PubMed - indexed for MEDLINE]
Free Article
17.

Inferring coregulation of transcription factors and microRNAs in breast cancer.

Wu JH, Sun YJ, Hsieh PH, Shieh GS.

Gene. 2013 Apr 10;518(1):139-44. doi: 10.1016/j.gene.2012.11.056. Epub 2012 Dec 14.

PMID:
23246694
[PubMed - indexed for MEDLINE]
18.

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals.

Takane K, Fujishima K, Watanabe Y, Sato A, Saito N, Tomita M, Kanai A.

BMC Genomics. 2010 Feb 9;11:101. doi: 10.1186/1471-2164-11-101.

PMID:
20144220
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

Predicting microRNA targets in time-series microarray experiments via functional data analysis.

Parker BJ, Wen J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S32. doi: 10.1186/1471-2105-10-S1-S32.

PMID:
19208133
[PubMed - indexed for MEDLINE]
Free PMC Article

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