Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 154


Comparative analysis of five protein-protein interaction corpora.

Pyysalo S, Airola A, Heimonen J, Björne J, Ginter F, Salakoski T.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S6. doi: 10.1186/1471-2105-9-S3-S6.


All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.

Airola A, Pyysalo S, Björne J, Pahikkala T, Ginter F, Salakoski T.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S2. doi: 10.1186/1471-2105-9-S11-S2.


Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3. doi: 10.1186/1471-2105-9-S3-S3.


Various criteria in the evaluation of biomedical named entity recognition.

Tsai RT, Wu SH, Chou WC, Lin YC, He D, Hsiang J, Sung TY, Hsu WL.

BMC Bioinformatics. 2006 Feb 24;7:92.


New challenges for text mining: mapping between text and manually curated pathways.

Oda K, Kim JD, Ohta T, Okanohara D, Matsuzaki T, Tateisi Y, Tsujii J.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S5. doi: 10.1186/1471-2105-9-S3-S5.


Investigating heterogeneous protein annotations toward cross-corpora utilization.

Wang Y, Kim JD, Saetre R, Pyysalo S, Tsujii J.

BMC Bioinformatics. 2009 Dec 9;10:403. doi: 10.1186/1471-2105-10-403.


Discovering novel protein-protein interactions by measuring the protein semantic similarity from the biomedical literature.

Chiang JH, Ju JH.

J Bioinform Comput Biol. 2014 Dec;12(6):1442008. doi: 10.1142/S0219720014420086.


A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

Tikk D, Thomas P, Palaga P, Hakenberg J, Leser U.

PLoS Comput Biol. 2010 Jul 1;6:e1000837. doi: 10.1371/journal.pcbi.1000837.


Neighborhood hash graph kernel for protein-protein interaction extraction.

Zhang Y, Lin H, Yang Z, Li Y.

J Biomed Inform. 2011 Dec;44(6):1086-92. doi: 10.1016/j.jbi.2011.08.011. Epub 2011 Aug 23.


Protein-protein interaction extraction by leveraging multiple kernels and parsers.

Miwa M, Saetre R, Miyao Y, Tsujii J.

Int J Med Inform. 2009 Dec;78(12):e39-46. doi: 10.1016/j.ijmedinf.2009.04.010. Epub 2009 Jun 4.


Extracting interactions between proteins from the literature.

Zhou D, He Y.

J Biomed Inform. 2008 Apr;41(2):393-407. doi: 10.1016/j.jbi.2007.11.008. Epub 2007 Dec 15. Review.


Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.


Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D.

Niu Y, Otasek D, Jurisica I.

Bioinformatics. 2010 Jan 1;26(1):111-9. doi: 10.1093/bioinformatics/btp602. Epub 2009 Oct 22.


PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology.

Li CX, Chen P, Wang RJ, Wang XJ, Su YR, Li J.

Int J Data Min Bioinform. 2014;10(1):98-119.


POSBIOTM-NER: a trainable biomedical named-entity recognition system.

Song Y, Kim E, Lee GG, Yi BK.

Bioinformatics. 2005 Jun 1;21(11):2794-6. Epub 2005 Apr 6.


Exploiting and integrating rich features for biological literature classification.

Wang H, Huang M, Ding S, Zhu X.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S4. doi: 10.1186/1471-2105-9-S3-S4.


Discovering functional interaction patterns in protein-protein interaction networks.

Turanalp ME, Can T.

BMC Bioinformatics. 2008 Jun 11;9:276. doi: 10.1186/1471-2105-9-276.


Exploring the application of deep learning techniques on medical text corpora.

Minarro-Giménez JA, Marín-Alonso O, Samwald M.

Stud Health Technol Inform. 2014;205:584-8.


Discovering patterns to extract protein-protein interactions from full texts.

Huang M, Zhu X, Hao Y, Payan DG, Qu K, Li M.

Bioinformatics. 2004 Dec 12;20(18):3604-12. Epub 2004 Jul 29.


Evaluating contributions of natural language parsers to protein-protein interaction extraction.

Miyao Y, Sagae K, Saetre R, Matsuzaki T, Tsujii J.

Bioinformatics. 2009 Feb 1;25(3):394-400. doi: 10.1093/bioinformatics/btn631. Epub 2008 Dec 9.

Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk