Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 78

1.

The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis.

Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, McEntee C, Kay SA, Chory J.

Cold Spring Harb Symp Quant Biol. 2007;72:353-63. doi: 10.1101/sqb.2007.72.006.

PMID:
18419293
[PubMed - indexed for MEDLINE]
2.

Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.

Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC.

PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907. Epub 2011 Jun 9.

PMID:
21694767
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules.

Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J.

PLoS Genet. 2008 Feb;4(2):e14. doi: 10.1371/journal.pgen.0040014.

PMID:
18248097
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Transcriptome phase distribution analysis reveals diurnal regulated biological processes and key pathways in rice flag leaves and seedling leaves.

Xu W, Yang R, Li M, Xing Z, Yang W, Chen G, Guo H, Gong X, Du Z, Zhang Z, Hu X, Wang D, Qian Q, Wang T, Su Z, Xue Y.

PLoS One. 2011 Mar 2;6(3):e17613. doi: 10.1371/journal.pone.0017613.

PMID:
21407816
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information.

Zeng H, Luo L, Zhang W, Zhou J, Li Z, Liu H, Zhu T, Feng X, Zhong Y.

Nucleic Acids Res. 2007 Jan;35(Database issue):D879-82. Epub 2006 Nov 16.

PMID:
17142239
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses.

Toufighi K, Brady SM, Austin R, Ly E, Provart NJ.

Plant J. 2005 Jul;43(1):153-63.

PMID:
15960624
[PubMed - indexed for MEDLINE]
7.

MADIBA: a web server toolkit for biological interpretation of Plasmodium and plant gene clusters.

Law PJ, Claudel-Renard C, Joubert F, Louw AI, Berger DK.

BMC Genomics. 2008 Feb 28;9:105. doi: 10.1186/1471-2164-9-105.

PMID:
18307768
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide comparative analysis of putative bidirectional promoters from rice, Arabidopsis and Populus.

Dhadi SR, Krom N, Ramakrishna W.

Gene. 2009 Jan 15;429(1-2):65-73. doi: 10.1016/j.gene.2008.09.034. Epub 2008 Oct 11.

PMID:
18973799
[PubMed - indexed for MEDLINE]
9.

Arabidopsis Gene Family Profiler (aGFP)--user-oriented transcriptomic database with easy-to-use graphic interface.

Dupl'áková N, Renák D, Hovanec P, Honysová B, Twell D, Honys D.

BMC Plant Biol. 2007 Jul 23;7:39.

PMID:
17645793
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Development of a novel data mining tool to find cis-elements in rice gene promoter regions.

Doi K, Hosaka A, Nagata T, Satoh K, Suzuki K, Mauleon R, Mendoza MJ, Bruskiewich R, Kikuchi S.

BMC Plant Biol. 2008 Feb 27;8:20. doi: 10.1186/1471-2229-8-20.

PMID:
18302796
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A morning-specific phytohormone gene expression program underlying rhythmic plant growth.

Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J.

PLoS Biol. 2008 Sep 16;6(9):e225. doi: 10.1371/journal.pbio.0060225.

PMID:
18798691
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H.

BMC Bioinformatics. 2008 Oct 27;9:455. doi: 10.1186/1471-2105-9-455.

PMID:
18950538
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis.

Schaffer R, Landgraf J, Accerbi M, Simon V, Larson M, Wisman E.

Plant Cell. 2001 Jan;13(1):113-23.

PMID:
11158533
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups.

Chang WC, Lee TY, Huang HD, Huang HY, Pan RL.

BMC Genomics. 2008 Nov 26;9:561. doi: 10.1186/1471-2164-9-561.

PMID:
19036138
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

CoP: a database for characterizing co-expressed gene modules with biological information in plants.

Ogata Y, Suzuki H, Sakurai N, Shibata D.

Bioinformatics. 2010 May 1;26(9):1267-8. doi: 10.1093/bioinformatics/btq121. Epub 2010 Mar 19.

PMID:
20305269
[PubMed - indexed for MEDLINE]
Free Article
16.

Construction of a rice glycosyltransferase phylogenomic database and identification of rice-diverged glycosyltransferases.

Cao PJ, Bartley LE, Jung KH, Ronald PC.

Mol Plant. 2008 Sep;1(5):858-77. doi: 10.1093/mp/ssn052.

PMID:
19825588
[PubMed - indexed for MEDLINE]
17.

Comparative analysis of divergent and convergent gene pairs and their expression patterns in rice, Arabidopsis, and populus.

Krom N, Ramakrishna W.

Plant Physiol. 2008 Aug;147(4):1763-73. doi: 10.1104/pp.108.122416. Epub 2008 May 30.

PMID:
18515639
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.

Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W.

Plant Physiol. 2004 Sep;136(1):2621-32. Erratum in: Plant Physiol. 2004 Dec;136(4):4335.

PMID:
15375207
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide identification of potential plant E2F target genes.

Vandepoele K, Vlieghe K, Florquin K, Hennig L, Beemster GT, Gruissem W, Van de Peer Y, Inzé D, De Veylder L.

Plant Physiol. 2005 Sep;139(1):316-28. Epub 2005 Aug 26.

PMID:
16126853
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E.

BMC Bioinformatics. 2003 Jun 23;4:25. Epub 2003 Jun 23.

PMID:
12820902
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk