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Related Citations for PubMed (Select 18369418)

1.

Evolutionary patterns in the sequence and structure of transfer RNA: early origins of archaea and viruses.

Sun FJ, Caetano-Anollés G.

PLoS Comput Biol. 2008 Mar 7;4(3):e1000018. doi: 10.1371/journal.pcbi.1000018.

2.

Transfer RNA and the origins of diversified life.

Sun FJ, Caetano-Anollés G.

Sci Prog. 2008;91(Pt 3):265-84. Review.

PMID:
18853577
3.
4.

Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code.

Sun FJ, Caetano-Anollés G.

PLoS One. 2008 Jul 30;3(7):e2799. doi: 10.1371/journal.pone.0002799.

5.

The ancient history of the structure of ribonuclease P and the early origins of Archaea.

Sun FJ, Caetano-Anollés G.

BMC Bioinformatics. 2010 Mar 24;11:153. doi: 10.1186/1471-2105-11-153.

6.

The origin and evolution of tRNA inferred from phylogenetic analysis of structure.

Sun FJ, Caetano-Anollés G.

J Mol Evol. 2008 Jan;66(1):21-35. Epub 2007 Dec 4.

PMID:
18058157
7.

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world.

Wang M, Yafremava LS, Caetano-Anollés D, Mittenthal JE, Caetano-Anollés G.

Genome Res. 2007 Nov;17(11):1572-85. Epub 2007 Oct 1.

8.

Discovery of permuted and recently split transfer RNAs in Archaea.

Chan PP, Cozen AE, Lowe TM.

Genome Biol. 2011;12(4):R38. doi: 10.1186/gb-2011-12-4-r38. Epub 2011 Apr 13.

9.

The evolutionary history of the structure of 5S ribosomal RNA.

Sun FJ, Caetano-Anollés G.

J Mol Evol. 2009 Nov;69(5):430-43. doi: 10.1007/s00239-009-9264-z. Epub 2009 Jul 29.

PMID:
19639237
10.

Biased gene transfer and its implications for the concept of lineage.

Andam CP, Gogarten JP.

Biol Direct. 2011 Sep 23;6:47. doi: 10.1186/1745-6150-6-47.

11.
12.

A phylogenomic census of molecular functions identifies modern thermophilic archaea as the most ancient form of cellular life.

Nasir A, Kim KM, Caetano-Anollés G.

Archaea. 2014 Aug 31;2014:706468. doi: 10.1155/2014/706468. eCollection 2014.

13.

Origin and evolution of protein fold designs inferred from phylogenomic analysis of CATH domain structures in proteomes.

Bukhari SA, Caetano-Anollés G.

PLoS Comput Biol. 2013;9(3):e1003009. doi: 10.1371/journal.pcbi.1003009. Epub 2013 Mar 28.

14.
15.

Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.

Sugahara J, Kikuta K, Fujishima K, Yachie N, Tomita M, Kanai A.

Mol Biol Evol. 2008 Dec;25(12):2709-16. doi: 10.1093/molbev/msn216. Epub 2008 Oct 1.

16.

Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves.

Fujishima K, Sugahara J, Tomita M, Kanai A.

PLoS One. 2008 Feb 20;3(2):e1622. doi: 10.1371/journal.pone.0001622.

17.

Proteome evolution and the metabolic origins of translation and cellular life.

Caetano-Anollés D, Kim KM, Mittenthal JE, Caetano-Anollés G.

J Mol Evol. 2011 Jan;72(1):14-33. doi: 10.1007/s00239-010-9400-9. Epub 2010 Nov 17.

PMID:
21082171
18.

A polyphyletic model for the origin of tRNAs has more support than a monophyletic model.

Di Giulio M.

J Theor Biol. 2013 Feb 7;318:124-8. doi: 10.1016/j.jtbi.2012.11.012. Epub 2012 Nov 19.

PMID:
23174278
20.

Formal proof that the split genes of tRNAs of Nanoarchaeum equitans are an ancestral character.

Di Giulio M.

J Mol Evol. 2009 Nov;69(5):505-11. doi: 10.1007/s00239-009-9280-z. Epub 2009 Sep 17.

PMID:
19760446
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