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Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids.

Park CC, Ahn S, Bloom JS, Lin A, Wang RT, Wu T, Sekar A, Khan AH, Farr CJ, Lusis AJ, Leahy RM, Lange K, Smith DJ.

Nat Genet. 2008 Apr;40(4):421-9. doi: 10.1038/ng.113. Epub 2008 Mar 23. Erratum in: Nat Genet. 2008 May;40(5):682.


Effects of genome-wide copy number variation on expression in mammalian cells.

Wang RT, Ahn S, Park CC, Khan AH, Lange K, Smith DJ.

BMC Genomics. 2011 Nov 16;12:562. doi: 10.1186/1471-2164-12-562.


Directed mammalian gene regulatory networks using expression and comparative genomic hybridization microarray data from radiation hybrids.

Ahn S, Wang RT, Park CC, Lin A, Leahy RM, Lange K, Smith DJ.

PLoS Comput Biol. 2009 Jun;5(6):e1000407. doi: 10.1371/journal.pcbi.1000407. Epub 2009 Jun 12.


Identifying regions of the wheat genome controlling seed development by mapping expression quantitative trait loci.

Jordan MC, Somers DJ, Banks TW.

Plant Biotechnol J. 2007 May;5(3):442-53. Epub 2007 Mar 26.


The first-generation whole-genome radiation hybrid map in the horse identifies conserved segments in human and mouse genomes.

Chowdhary BP, Raudsepp T, Kata SR, Goh G, Millon LV, Allan V, Piumi F, Guérin G, Swinburne J, Binns M, Lear TL, Mickelson J, Murray J, Antczak DF, Womack JE, Skow LC.

Genome Res. 2003 Apr;13(4):742-51. Erratum in: Genome Res. 2003 Jun;13(6a):1258.


Copy number variation influences gene expression and metabolic traits in mice.

Orozco LD, Cokus SJ, Ghazalpour A, Ingram-Drake L, Wang S, van Nas A, Che N, Araujo JA, Pellegrini M, Lusis AJ.

Hum Mol Genet. 2009 Nov 1;18(21):4118-29. doi: 10.1093/hmg/ddp360. Epub 2009 Jul 31.


X inactivation analysis and DNA methylation studies of the ubiquitin activating enzyme E1 and PCTAIRE-1 genes in human and mouse.

Carrel L, Clemson CM, Dunn JM, Miller AP, Hunt PA, Lawrence JB, Willard HF.

Hum Mol Genet. 1996 Mar;5(3):391-401.


Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids.

Swanson-Wagner RA, DeCook R, Jia Y, Bancroft T, Ji T, Zhao X, Nettleton D, Schnable PS.

Science. 2009 Nov 20;326(5956):1118-20. doi: 10.1126/science.1178294.


The rapid evolution of X-linked male-biased gene expression and the large-X effect in Drosophila yakuba, D. santomea, and their hybrids.

Llopart A.

Mol Biol Evol. 2012 Dec;29(12):3873-86. doi: 10.1093/molbev/mss190. Epub 2012 Jul 26.


Expression QTL and regulatory network analysis of microtubule-associated protein tau gene.

Shen Q, Wang X, Chen Y, Xu L, Wang X, Lu L.

Parkinsonism Relat Disord. 2009 Aug;15(7):525-31. doi: 10.1016/j.parkreldis.2008.10.010. Epub 2009 Feb 23.


Expression quantitative trait locus mapping of toxoplasma genes reveals multiple mechanisms for strain-specific differences in gene expression.

Boyle JP, Saeij JP, Harada SY, Ajioka JW, Boothroyd JC.

Eukaryot Cell. 2008 Aug;7(8):1403-14. doi: 10.1128/EC.00073-08. Epub 2008 Jun 13.


Female-biased expression of long non-coding RNAs in domains that escape X-inactivation in mouse.

Reinius B, Shi C, Hengshuo L, Sandhu KS, Radomska KJ, Rosen GD, Lu L, Kullander K, Williams RW, Jazin E.

BMC Genomics. 2010 Nov 3;11:614. doi: 10.1186/1471-2164-11-614.


Microarray analysis of rat chromosome 2 congenic strains.

McBride MW, Carr FJ, Graham D, Anderson NH, Clark JS, Lee WK, Charchar FJ, Brosnan MJ, Dominiczak AF.

Hypertension. 2003 Mar;41(3 Pt 2):847-53. Epub 2002 Dec 2. Erratum in: Hypertension. 2003 May 5;41(6):e13.


Radiation hybrid map of 13 loci on the long arm of chromosome 5.

Warrington JA, Hall LV, Hinton LM, Miller JN, Wasmuth JJ, Lovett M.

Genomics. 1991 Nov;11(3):701-8. Erratum in: Genomics 1992 Nov;14(3):832.


Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid.

Kirst M, Basten CJ, Myburg AA, Zeng ZB, Sederoff RR.

Genetics. 2005 Apr;169(4):2295-303. Epub 2005 Jan 31.


Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.

GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE.

BMC Genomics. 2006 Sep 15;7:235.


Physical mapping of genes in somatic cell radiation hybrids by comparative genomic hybridization to cDNA microarrays.

Lin JY, Pollack JR, Chou FL, Rees CA, Christian AT, Bedford JS, Brown PO, Ginsberg MH.

Genome Biol. 2002;3(6):RESEARCH0026. Epub 2002 May 14.

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