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Results: 1 to 20 of 124

1.

PGEToolbox: A Matlab toolbox for population genetics and evolution.

Cai JJ.

J Hered. 2008 Jul-Aug;99(4):438-40. doi: 10.1093/jhered/esm127. Epub 2008 Feb 29.

PMID:
18310616
[PubMed - indexed for MEDLINE]
Free Article
2.

DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis.

Rozas J, Rozas R.

Comput Appl Biosci. 1997 Jun;13(3):307-11.

PMID:
9183537
[PubMed - indexed for MEDLINE]
3.

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.

Dutheil J, Gaillard S, Bazin E, Glémin S, Ranwez V, Galtier N, Belkhir K.

BMC Bioinformatics. 2006 Apr 4;7:188.

PMID:
16594991
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Computer programs for population genetics data analysis: a survival guide.

Excoffier L, Heckel G.

Nat Rev Genet. 2006 Oct;7(10):745-58. Epub 2006 Aug 22. Review.

PMID:
16924258
[PubMed - indexed for MEDLINE]
5.

DetSel 1.0: a computer program to detect markers responding to selection.

Vitalis R, Dawson K, Boursot P, Belkhir K.

J Hered. 2003 Sep-Oct;94(5):429-31.

PMID:
14557398
[PubMed - indexed for MEDLINE]
Free Article
6.

Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes.

Amigo J, Phillips C, Salas A, Carracedo A.

BMC Bioinformatics. 2009 Mar 19;10 Suppl 3:S5. doi: 10.1186/1471-2105-10-S3-S5.

PMID:
19344481
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.

Rozas J, Rozas R.

Bioinformatics. 1999 Feb;15(2):174-5.

PMID:
10089204
[PubMed - indexed for MEDLINE]
Free Article
8.

invertFREGENE: software for simulating inversions in population genetic data.

O'Reilly PF, Coin LJ, Hoggart CJ.

Bioinformatics. 2010 Mar 15;26(6):838-40. doi: 10.1093/bioinformatics/btq029. Epub 2010 Jan 26.

PMID:
20106819
[PubMed - indexed for MEDLINE]
Free Article
9.

Adaptive microclimatic structural and expressional dehydrin 1 evolution in wild barley, Hordeum spontaneum, at 'Evolution Canyon', Mount Carmel, Israel.

Yang Z, Zhang T, Bolshoy A, Beharav A, Nevo E.

Mol Ecol. 2009 May;18(9):2063-75. doi: 10.1111/j.1365-294X.2009.04140.x. Epub 2009 Mar 26.

PMID:
19344351
[PubMed - indexed for MEDLINE]
10.

The automation of Nested Clade Phylogeographic Analysis.

Panchal M.

Bioinformatics. 2007 Feb 15;23(4):509-10. Epub 2006 Dec 1.

PMID:
17142814
[PubMed - indexed for MEDLINE]
Free Article
11.

Single nucleotide polymorphism discovery in barley using autoSNPdb.

Duran C, Appleby N, Vardy M, Imelfort M, Edwards D, Batley J.

Plant Biotechnol J. 2009 May;7(4):326-33. doi: 10.1111/j.1467-7652.2009.00407.x.

PMID:
19386041
[PubMed - indexed for MEDLINE]
12.

Genome-wide DNA polymorphism analyses using VariScan.

Hutter S, Vilella AJ, Rozas J.

BMC Bioinformatics. 2006 Sep 12;7:409.

PMID:
16968531
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

GGtools: analysis of genetics of gene expression in bioconductor.

Carey VJ, Morgan M, Falcon S, Lazarus R, Gentleman R.

Bioinformatics. 2007 Feb 15;23(4):522-3. Epub 2006 Dec 8. Review.

PMID:
17158513
[PubMed - indexed for MEDLINE]
Free Article
14.

Variation in estimated recombination rates across human populations.

Graffelman J, Balding DJ, Gonzalez-Neira A, Bertranpetit J.

Hum Genet. 2007 Nov;122(3-4):301-10. Epub 2007 Jul 3.

PMID:
17609980
[PubMed - indexed for MEDLINE]
15.

GenABEL: an R library for genome-wide association analysis.

Aulchenko YS, Ripke S, Isaacs A, van Duijn CM.

Bioinformatics. 2007 May 15;23(10):1294-6. Epub 2007 Mar 23.

PMID:
17384015
[PubMed - indexed for MEDLINE]
Free Article
16.

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

Väli U, Einarsson A, Waits L, Ellegren H.

Mol Ecol. 2008 Sep;17(17):3808-17. doi: 10.1111/j.1365-294X.2008.03876.x. Epub 2008 Jul 18.

PMID:
18647238
[PubMed - indexed for MEDLINE]
17.

SNP@Evolution: a hierarchical database of positive selection on the human genome.

Cheng F, Chen W, Richards E, Deng L, Zeng C.

BMC Evol Biol. 2009 Sep 5;9:221. doi: 10.1186/1471-2148-9-221.

PMID:
19732458
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Coalescing into the 21st century: An overview and prospects of coalescent theory.

Fu YX, Li WH.

Theor Popul Biol. 1999 Aug;56(1):1-10. Review.

PMID:
10438665
[PubMed - indexed for MEDLINE]
19.

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms.

Rosenberg NA, Nordborg M.

Nat Rev Genet. 2002 May;3(5):380-90. Review.

PMID:
11988763
[PubMed - indexed for MEDLINE]
20.

An integrated pipeline of open source software adapted for multi-CPU architectures: use in the large-scale identification of single nucleotide polymorphisms.

Jayashree B, Hanspal MS, Srinivasan R, Vigneshwaran R, Varshney RK, Spurthi N, Eshwar K, Ramesh N, Chandra S, Hoisington DA.

Comp Funct Genomics. 2007:35604. doi: 10.1155/2007/35604.

PMID:
18273384
[PubMed]
Free PMC Article

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