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Similar articles for PubMed (Select 18278030)

1.

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE.

Nature. 2008 Mar 13;452(7184):215-9. doi: 10.1038/nature06745. Epub 2008 Feb 17.

2.

Bisulphite sequencing of plant genomic DNA.

Aichinger E, Köhler C.

Methods Mol Biol. 2010;655:433-43. doi: 10.1007/978-1-60761-765-5_29.

PMID:
20734278
3.

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR.

Cell. 2006 Sep 22;126(6):1189-201. Epub 2006 Aug 31.

4.

Analysis of DNA methylation in plants by bisulfite sequencing.

Foerster AM, Mittelsten Scheid O.

Methods Mol Biol. 2010;631:1-11. doi: 10.1007/978-1-60761-646-7_1.

PMID:
20204863
5.

Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.

Dinh HQ, Dubin M, Sedlazeck FJ, Lettner N, Mittelsten Scheid O, von Haeseler A.

PLoS One. 2012;7(7):e41528. doi: 10.1371/journal.pone.0041528. Epub 2012 Jul 20.

6.
7.

DNA methylation: bisulphite modification and analysis.

Patterson K, Molloy L, Qu W, Clark S.

J Vis Exp. 2011 Oct 21;(56). pii: 3170. doi: 10.3791/3170.

8.

CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing.

Hetzl J, Foerster AM, Raidl G, Mittelsten Scheid O.

Plant J. 2007 Aug;51(3):526-36. Epub 2007 Jun 8.

PMID:
17559516
9.

High sensitivity mapping of methylated cytosines.

Clark SJ, Harrison J, Paul CL, Frommer M.

Nucleic Acids Res. 1994 Aug 11;22(15):2990-7.

10.

Determining the conservation of DNA methylation in Arabidopsis.

Widman N, Jacobsen SE, Pellegrini M.

Epigenetics. 2009 Feb 16;4(2):119-24.

11.

Finding the fifth base: genome-wide sequencing of cytosine methylation.

Lister R, Ecker JR.

Genome Res. 2009 Jun;19(6):959-66. doi: 10.1101/gr.083451.108. Epub 2009 Mar 9. Review.

12.

Single nucleotide analysis of cytosine methylation by whole-genome shotgun bisulfite sequencing.

Johnson MD, Mueller M, Game L, Aitman TJ.

Curr Protoc Mol Biol. 2012 Jul;Chapter 21:Unit21.23. doi: 10.1002/0471142727.mb2123s99.

PMID:
22870857
13.

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes.

Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S.

Curr Biol. 2005 Jan 26;15(2):154-9.

PMID:
15668172
14.

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana.

Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE.

Genome Biol. 2009;10(6):R62. doi: 10.1186/gb-2009-10-6-r62. Epub 2009 Jun 9.

15.

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression.

Vining KJ, Pomraning KR, Wilhelm LJ, Priest HD, Pellegrini M, Mockler TC, Freitag M, Strauss SH.

BMC Genomics. 2012 Jan 17;13:27. doi: 10.1186/1471-2164-13-27.

16.

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S.

Nat Genet. 2007 Jan;39(1):61-9. Epub 2006 Nov 26.

PMID:
17128275
17.

Studying the epigenome using next generation sequencing.

Ku CS, Naidoo N, Wu M, Soong R.

J Med Genet. 2011 Nov;48(11):721-30. doi: 10.1136/jmedgenet-2011-100242. Epub 2011 Aug 8. Review.

PMID:
21825079
18.

DNA cytosine methylation in plant development.

Zhang M, Kimatu JN, Xu K, Liu B.

J Genet Genomics. 2010 Jan;37(1):1-12. doi: 10.1016/S1673-8527(09)60020-5. Review.

PMID:
20171573
19.
20.

The first high-resolution DNA "methylome".

Schöb H, Grossniklaus U.

Cell. 2006 Sep 22;126(6):1025-8. Review.

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